RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 MED6O75586 246 aa11.8□□□□□ -0.52
CLN3-201ENST00000333496 DEDDO75618 318 aa11.8□□□□□ -0.52
CLN3-201ENST00000333496 OR10J1P30954 320 aa11.8□□□□□ -0.52
CLN3-201ENST00000333496 ATP5IP56385 69 aaPredicted RBP11.8□□□□□ -0.52
CLN3-201ENST00000333496 ID3Q02535 119 aa11.8□□□□□ -0.52
CLN3-201ENST00000333496 BPIFCQ8NFQ6 507 aa11.8□□□□□ -0.52
CLN3-201ENST00000333496 NARS2Q96I59 477 aaKnown RBP11.8□□□□□ -0.52
CLN3-201ENST00000333496 WWC2-AS2Q96NR7 200 aa11.8□□□□□ -0.52
CLN3-201ENST00000333496 RCHY1Q96PM5 261 aa11.8□□□□□ -0.52
CLN3-201ENST00000333496 WRBO00258 174 aa11.79□□□□□ -0.52
CLN3-201ENST00000333496 IFNA4P05014 189 aa11.79□□□□□ -0.52
CLN3-201ENST00000333496 NKX2-1P43699 371 aaPredicted RBP11.79□□□□□ -0.52
CLN3-201ENST00000333496 TMED6Q8WW62 240 aa11.79□□□□□ -0.52
CLN3-201ENST00000333496 ACY3Q96HD9 319 aa11.79□□□□□ -0.52
CLN3-201ENST00000333496 IGHV3-66A0A0C4DH42 116 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 JTBO76095 146 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 ATF4P18848 351 aaPredicted RBP11.78□□□□□ -0.52
CLN3-201ENST00000333496 CRYBB3P26998 211 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 YPEL3P61236 119 aaPredicted RBP11.78□□□□□ -0.52
CLN3-201ENST00000333496 GAMTQ14353 236 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 ODF3L2Q3SX64 289 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 PXDC1Q5TGL8 231 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 SVBPQ8N300 66 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 NKX6-2Q9C056 277 aaPredicted RBP11.78□□□□□ -0.52
CLN3-201ENST00000333496 ZMAT4Q9H898 229 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 NBEAL2Q6ZNJ1 2754 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 TMEM218A2RU14 115 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 E5RGE8 158 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 SCGB2A1O75556 95 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 NPPCP23582 126 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 RPL12P30050 165 aaKnown RBP11.78□□□□□ -0.52
CLN3-201ENST00000333496 GPX4P36969 197 aaPredicted RBP11.78□□□□□ -0.52
CLN3-201ENST00000333496 POLR2GP62487 172 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLN3-201ENST00000333496 SMIM8Q96KF7 97 aa11.78□□□□□ -0.52
CLN3-201ENST00000333496 CIB3Q96Q77 187 aaPredicted RBP11.78□□□□□ -0.52
CLN3-201ENST00000333496 RCL1Q9Y2P8 373 aaKnown RBP11.78□□□□□ -0.52
CLN3-201ENST00000333496 STAB2Q8WWQ8 2551 aa11.77□□□□□ -0.53
CLN3-201ENST00000333496 IGKV3-7A0A075B6H7 116 aa11.77□□□□□ -0.53
CLN3-201ENST00000333496 IGKV1D-37A0A075B6S9 117 aa11.77□□□□□ -0.53
CLN3-201ENST00000333496 ZNF705EA8MWA4 302 aaPredicted RBP11.77□□□□□ -0.53
CLN3-201ENST00000333496 PRSS46E5RG02 174 aa11.77□□□□□ -0.53
CLN3-201ENST00000333496 RAB11AP62491 216 aa11.77□□□□□ -0.53
CLN3-201ENST00000333496 BLOC1S1P78537 153 aa11.77□□□□□ -0.53
CLN3-201ENST00000333496 TCF24Q7RTU0 167 aa11.77□□□□□ -0.53
CLN3-201ENST00000333496 CARHSP1Q9Y2V2 147 aaKnown RBP11.77□□□□□ -0.53
CLN3-201ENST00000333496 DFFBO76075 338 aa11.76□□□□□ -0.53
CLN3-201ENST00000333496 SULT1A2P50226 295 aa11.76□□□□□ -0.53
CLN3-201ENST00000333496 C10orf91Q5T1B1 145 aa11.76□□□□□ -0.53
CLN3-201ENST00000333496 Q8WTZ3 238 aa11.76□□□□□ -0.53
CLN3-201ENST00000333496 METTL26Q96S19 204 aa11.76□□□□□ -0.53
CLN3-201ENST00000333496 FBXL17Q9UF56 701 aa11.76□□□□□ -0.53
CLN3-201ENST00000333496 U3KQE9 123 aa11.76□□□□□ -0.53
CLN3-201ENST00000333496 OR4C46A6NHA9 309 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 H3BP45 60 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 TOMM40O96008 361 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 PSG1P11464 419 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 USF2Q15853 346 aaPredicted RBP11.75□□□□□ -0.53
CLN3-201ENST00000333496 SPANXN5Q5MJ07 72 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 RPL7L1Q6DKI1 246 aaKnown RBP11.75□□□□□ -0.53
CLN3-201ENST00000333496 GBGT1Q8N5D6 347 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 FAM110AQ9BQ89 295 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 SPATA25Q9BR10 227 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 C11orf1Q9H5F2 150 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 IGKV1OR2-108A0A075B7D4 117 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 DNASE2O00115 360 aaPredicted RBP11.75□□□□□ -0.53
CLN3-201ENST00000333496 SSSCA1O60232 199 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 CD5P06127 495 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 RD3LP0DJH9 198 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 PVALBP20472 110 aaPredicted RBP11.75□□□□□ -0.53
CLN3-201ENST00000333496 BMI1P35226 326 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 P2RY1P47900 373 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 TFPI2P48307 235 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 PAX9P55771 341 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 ZNF90Q03938 601 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 SMUG1Q53HV7 270 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 SLC35E1Q96K37 410 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 SEC11CQ9BY50 192 aa11.75□□□□□ -0.53
CLN3-201ENST00000333496 BORCS7-ASMTA0A0B4J1R7 106 aa11.74□□□□□ -0.53
CLN3-201ENST00000333496 A0A1W2PS18 150 aa11.74□□□□□ -0.53
CLN3-201ENST00000333496 IL4P05112 153 aa11.74□□□□□ -0.53
CLN3-201ENST00000333496 CAV2P51636 162 aa11.74□□□□□ -0.53
CLN3-201ENST00000333496 VAMP2P63027 116 aa11.74□□□□□ -0.53
CLN3-201ENST00000333496 RPP30P78346 268 aaKnown RBP11.74□□□□□ -0.53
CLN3-201ENST00000333496 ATRAIDQ6UW56 229 aa11.74□□□□□ -0.53
CLN3-201ENST00000333496 CLRN3Q8NCR9 226 aa11.74□□□□□ -0.53
CLN3-201ENST00000333496 MS4A6AQ9H2W1 248 aa11.74□□□□□ -0.53
CLN3-201ENST00000333496 RETNQ9HD89 108 aa11.74□□□□□ -0.53
CLN3-201ENST00000333496 ZFP92A6NM28 416 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 PMS2P5A8MQ11 134 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 F8W036 122 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 SNAPINO95295 136 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 ZNF124Q15973 351 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 FAM122CQ6P4D5 195 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 ARV1Q9H2C2 271 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 TMEM231Q9H6L2 316 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 PSENENQ9NZ42 101 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 STRAPQ9Y3F4 350 aaKnown RBP11.73□□□□□ -0.53
CLN3-201ENST00000333496 AGRNO00468 2067 aa11.73□□□□□ -0.53
CLN3-201ENST00000333496 LOC102724200A0A096LPH7 203 aaPredicted RBP11.72□□□□□ -0.53
CLN3-201ENST00000333496 ADCYAP1P18509 176 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms