RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 SH3BGRL2Q9UJC5 107 aa13.21□□□□□ -0.29
LINC00554-201ENST00000564841 COL12A1Q99715 3063 aa13.21□□□□□ -0.3
LINC00554-201ENST00000564841 ERVK-16P61578 105 aa13.21□□□□□ -0.3
LINC00554-201ENST00000564841 RPL24P83731 157 aaKnown RBP13.21□□□□□ -0.3
LINC00554-201ENST00000564841 RBPJQ06330 500 aa13.21□□□□□ -0.3
LINC00554-201ENST00000564841 BPIFA4PQ86YQ2 179 aa13.21□□□□□ -0.3
LINC00554-201ENST00000564841 C9orf106Q8NAJ2 232 aa13.21□□□□□ -0.3
LINC00554-201ENST00000564841 GRAMD2BQ96HH9 432 aa13.21□□□□□ -0.3
LINC00554-201ENST00000564841 AP1S3Q96PC3 154 aa13.21□□□□□ -0.3
LINC00554-201ENST00000564841 THYN1Q9P016 225 aa13.21□□□□□ -0.3
LINC00554-201ENST00000564841 SPTAN1Q13813 2472 aaKnown RBP13.2□□□□□ -0.3
LINC00554-201ENST00000564841 SSBP2P81877 361 aaPredicted RBP13.2□□□□□ -0.3
LINC00554-201ENST00000564841 LRRC29Q8WV35 223 aa13.2□□□□□ -0.3
LINC00554-201ENST00000564841 H3BTX0 84 aa13.2□□□□□ -0.3
LINC00554-201ENST00000564841 NAV3Q8IVL0 2385 aa13.2□□□□□ -0.3
LINC00554-201ENST00000564841 HIST1H1EP10412 219 aaKnown RBP13.19□□□□□ -0.3
LINC00554-201ENST00000564841 IGHV1-2P23083 117 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 FXYD7P58549 80 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 RPRMLQ8N4K4 120 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 GTSF1Q8WW33 167 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 MAP1LC3CQ9BXW4 147 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 SLC25A10Q9UBX3 287 aaPredicted RBP13.19□□□□□ -0.3
LINC00554-201ENST00000564841 RABAC1Q9UI14 185 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 CSMD1Q96PZ7 3565 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 J3QR06 171 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 ACP7Q6ZNF0 438 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 SLC25A33Q9BSK2 321 aa13.19□□□□□ -0.3
LINC00554-201ENST00000564841 IGHV3OR15-7A0A075B7D8 119 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 SMPD2O60906 423 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 AZU1P20160 251 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 TBC1D28Q2M2D7 210 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 ZADH2Q8N4Q0 377 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 TNFRSF14Q92956 283 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 PLXNB1O43157 2135 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 A0A1B0GXF2 115 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 OR10AG1Q8NH19 301 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 H1FXQ92522 213 aaKnown RBP13.18□□□□□ -0.3
LINC00554-201ENST00000564841 NHLH1Q02575 133 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 KIR3DS1Q14943 382 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 GUSBP1Q15486 140 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 OR2K2Q8NGT1 345 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 FAM167A-AS1Q96KT0 104 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 S1PR3Q99500 378 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 ASCL2Q99929 193 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 SLC25A2Q9BXI2 301 aa13.18□□□□□ -0.3
LINC00554-201ENST00000564841 ZNF71Q9NQZ8 489 aaPredicted RBP13.18□□□□□ -0.3
LINC00554-201ENST00000564841 A0A0G2JLM5 398 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 C9orf118A6NHY6 69 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 C8orf88P0DMB2 117 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 COX8AP10176 69 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 PLP1P60201 277 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 FAM201AQ5SY85 155 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 GTF2H5Q6ZYL4 71 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 TEX48A0A1B0GUV7 120 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 K7EP34 96 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 HLA-DRB1P01911 266 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 FAM106CPP0CH98 169 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 FAM106AQ4KMX7 169 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 NEGR1Q7Z3B1 354 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 Q8IYB0 196 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 BLNKQ8WV28 456 aa13.17□□□□□ -0.3
LINC00554-201ENST00000564841 K7EMI3 77 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 HBBP68871 147 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 C11orf53Q8IXP5 236 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 WDR31Q8NA23 367 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 OR10W1Q8NGF6 305 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 SVIPQ8NHG7 77 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 KLF14Q8TD94 323 aaPredicted RBP13.16□□□□□ -0.3
LINC00554-201ENST00000564841 ENY2Q9NPA8 101 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 C15orf65H3BRN8 121 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 PEX7O00628 323 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 HOXC12P31275 282 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 NPFFR1Q9GZQ6 430 aa13.16□□□□□ -0.3
LINC00554-201ENST00000564841 C15orf61A6NNL5 157 aa13.15□□□□□ -0.3
LINC00554-201ENST00000564841 RASL11AQ6T310 242 aa13.15□□□□□ -0.3
LINC00554-201ENST00000564841 COL25A1Q9BXS0 654 aaPredicted RBP13.15□□□□□ -0.3
LINC00554-201ENST00000564841 PPIAL4CA0A0B4J2A2 164 aa13.15□□□□□ -0.3
LINC00554-201ENST00000564841 NRN1LQ496H8 165 aa13.15□□□□□ -0.3
LINC00554-201ENST00000564841 SPRNQ5BIV9 151 aa13.15□□□□□ -0.3
LINC00554-201ENST00000564841 ZNF329Q86UD4 541 aa13.15□□□□□ -0.3
LINC00554-201ENST00000564841 SPCS1Q9Y6A9 102 aa13.15□□□□□ -0.3
LINC00554-201ENST00000564841 TANC2Q9HCD6 1990 aa13.15□□□□□ -0.3
LINC00554-201ENST00000564841 KIR2DL2P43627 348 aaPredicted RBP13.15□□□□□ -0.3
LINC00554-201ENST00000564841 HSPE1P61604 102 aaKnown RBP13.15□□□□□ -0.3
LINC00554-201ENST00000564841 ZNRD1Q9P1U0 126 aa13.15□□□□□ -0.3
LINC00554-201ENST00000564841 F11RQ9Y624 299 aaKnown RBP13.15□□□□□ -0.3
LINC00554-201ENST00000564841 SPINT2O43291 252 aa13.14□□□□□ -0.31
LINC00554-201ENST00000564841 TIMM8AO60220 97 aaPredicted RBP13.14□□□□□ -0.31
LINC00554-201ENST00000564841 C7orf69Q9H7B7 122 aa13.14□□□□□ -0.31
LINC00554-201ENST00000564841 OR51B2Q9Y5P1 312 aa13.14□□□□□ -0.31
LINC00554-201ENST00000564841 BSNQ9UPA5 3926 aa13.14□□□□□ -0.31
LINC00554-201ENST00000564841 FGF6P10767 208 aa13.14□□□□□ -0.31
LINC00554-201ENST00000564841 TAS2R45P59539 299 aa13.14□□□□□ -0.31
LINC00554-201ENST00000564841 CD177Q8N6Q3 437 aa13.14□□□□□ -0.31
LINC00554-201ENST00000564841 OR8A1Q8NGG7 326 aa13.14□□□□□ -0.31
LINC00554-201ENST00000564841 C1RLQ9NZP8 487 aa13.14□□□□□ -0.31
LINC00554-201ENST00000564841 ABCA4P78363 2273 aa13.13□□□□□ -0.31
LINC00554-201ENST00000564841 LOXL1Q08397 574 aaPredicted RBP13.13□□□□□ -0.31
LINC00554-201ENST00000564841 RTL8BQ17RB0 113 aa13.13□□□□□ -0.31
LINC00554-201ENST00000564841 PIP4P2Q8N4L2 257 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms