RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 DEFB1P60022 68 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 POLR2GP62487 172 aaKnown RBP eCLIP7.79□□□□□ -1.16
CD44-227ENST00000528086 THAP8Q8NA92 274 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 Q8WTZ3 238 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 NDUFA13Q9P0J0 144 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 TBC1D24Q9ULP9 559 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 TP53TG1Q9Y2A0 90 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 KMT2AQ03164 3969 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 KNCNA6PVL3 124 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 H3BP45 60 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 ZNF688P0C7X2 276 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 ATP5IP56385 69 aaPredicted RBP7.78□□□□□ -1.16
CD44-227ENST00000528086 IFITM3Q01628 133 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 ARL16Q0P5N6 197 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 CNPY1Q3B7I2 92 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 ETFRF1Q6IPR1 90 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 TRPT1Q86TN4 253 aaKnown RBP7.78□□□□□ -1.16
CD44-227ENST00000528086 STXBP6Q8NFX7 210 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 MITD1Q8WV92 249 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 GRAMD2BQ96HH9 432 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 C7orf50Q9BRJ6 194 aaKnown RBP7.78□□□□□ -1.16
CD44-227ENST00000528086 WDR12Q9GZL7 423 aaKnown RBP7.78□□□□□ -1.16
CD44-227ENST00000528086 CSTL1Q9H114 145 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 C11orf1Q9H5F2 150 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 CACFD1Q9UGQ2 172 aa7.78□□□□□ -1.16
CD44-227ENST00000528086 EPPK1P58107 5090 aaKnown RBP7.77□□□□□ -1.17
CD44-227ENST00000528086 A0A1W2PS18 150 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 UBE2CO00762 179 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 SOCS3O14543 225 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 LYRM1O43325 122 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 CD5P06127 495 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 C4BPBP20851 252 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 GATA2P23769 480 aaPredicted RBP7.77□□□□□ -1.17
CD44-227ENST00000528086 APOC4P55056 127 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 RPL11P62913 178 aaKnown RBP7.77□□□□□ -1.17
CD44-227ENST00000528086 OR2F1Q13607 317 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 NOXA1Q86UR1 476 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 IL17DQ8TAD2 202 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 RNF125Q96EQ8 232 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 TRGV9Q99603 122 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 SEC22CQ9BRL7 303 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 C20orf85Q9H1P6 137 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 RABAC1Q9UI14 185 aa7.77□□□□□ -1.17
CD44-227ENST00000528086 RCL1Q9Y2P8 373 aaKnown RBP7.77□□□□□ -1.17
CD44-227ENST00000528086 DNASE2O00115 360 aaPredicted RBP7.76□□□□□ -1.17
CD44-227ENST00000528086 CCSO14618 274 aa7.76□□□□□ -1.17
CD44-227ENST00000528086 TCRBP04435 133 aa7.76□□□□□ -1.17
CD44-227ENST00000528086 BMI1P35226 326 aa7.76□□□□□ -1.17
CD44-227ENST00000528086 SPANXN5Q5MJ07 72 aa7.76□□□□□ -1.17
CD44-227ENST00000528086 GDF5OSQ5U4N7 250 aa7.76□□□□□ -1.17
CD44-227ENST00000528086 TMEM14EPQ6UXP3 125 aa7.76□□□□□ -1.17
CD44-227ENST00000528086 ACOT7LQ6ZUV0 252 aa7.76□□□□□ -1.17
CD44-227ENST00000528086 ZBTB8BQ8NAP8 495 aaPredicted RBP7.76□□□□□ -1.17
CD44-227ENST00000528086 CSNK1G2-AS1Q8NCQ2 148 aa7.76□□□□□ -1.17
CD44-227ENST00000528086 TMEM231Q9H6L2 316 aa7.76□□□□□ -1.17
CD44-227ENST00000528086 TRAV6A0A075B6T7 132 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 ZFP92A6NM28 416 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 MED6O75586 246 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 MBPP02686 304 aaPredicted RBP7.75□□□□□ -1.17
CD44-227ENST00000528086 EIF2B2P49770 351 aaKnown RBP7.75□□□□□ -1.17
CD44-227ENST00000528086 PAFAH1B2P68402 229 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 IL15RAQ13261 267 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 C4orf46Q504U0 113 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 SLC35E1Q96K37 410 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 SMIM8Q96KF7 97 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 RAB40CQ96S21 281 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 DNAH10Q8IVF4 4471 aa7.75□□□□□ -1.17
CD44-227ENST00000528086 DNAH6Q9C0G6 4158 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 SSSCA1O60232 199 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 RBMY1A1P0DJD3 496 aaKnown RBP7.74□□□□□ -1.17
CD44-227ENST00000528086 RBMY1CP0DJD4 496 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 NKX2-1P43699 371 aaPredicted RBP7.74□□□□□ -1.17
CD44-227ENST00000528086 INPP1P49441 399 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 CMC4P56277 68 aaPredicted RBP7.74□□□□□ -1.17
CD44-227ENST00000528086 LYZP61626 148 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 RAB11AP62491 216 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 RBMY1FQ15415 496 aaKnown RBP7.74□□□□□ -1.17
CD44-227ENST00000528086 IAH1Q2TAA2 248 aaPredicted RBP7.74□□□□□ -1.17
CD44-227ENST00000528086 PSMG4Q5JS54 123 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 OR8G2PQ6IF36 304 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 SIGLEC15Q6ZMC9 328 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 COQ8AQ8NI60 647 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 C20orf173Q96LM9 149 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 CIB3Q96Q77 187 aaPredicted RBP7.74□□□□□ -1.17
CD44-227ENST00000528086 CCDC32Q9BV29 185 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 PBDC1Q9BVG4 233 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 NRN1Q9NPD7 142 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 NUDT15Q9NV35 164 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 PAIP2BQ9ULR5 123 aaKnown RBP7.74□□□□□ -1.17
CD44-227ENST00000528086 X6R8D5 127 aa7.74□□□□□ -1.17
CD44-227ENST00000528086 PIGBOS1A0A0B4J2F0 54 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 C7orf66A4D0T2 115 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 HELTA6NFD8 242 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 H3BMM0 161 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 DEFB4AO15263 64 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 CA1P00915 261 aaPredicted RBP7.73□□□□□ -1.17
CD44-227ENST00000528086 METTL15P1P0C7V9 234 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 ATF4P18848 351 aaPredicted RBP7.73□□□□□ -1.17
CD44-227ENST00000528086 ACTL10Q5JWF8 245 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 LINC00299Q6ZSB3 139 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms