RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 NUPL2O15504 423 aaKnown RBP16.34■□□□□ 0.21
VPS28-208ENST00000527797 HYPMO75409 117 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 CLEC3BP05452 202 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 CTSGP08311 255 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 ORM2P19652 201 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 RAB9AP51151 201 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 SPATA31B1PQ5VZV4 182 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 PATE2Q6UY27 113 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 OR51G1Q8NGK1 321 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 OR1B1Q8NGR6 318 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 Q8WTZ3 238 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 CCDC140Q96MF4 163 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 FAM210AQ96ND0 272 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 PBDC1Q9BVG4 233 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 MRPL32Q9BYC8 188 aaKnown RBP16.34■□□□□ 0.21
VPS28-208ENST00000527797 KLK15Q9H2R5 256 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 A0A0G2JLM5 398 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 STAG3L2P0CL84 134 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 STAG3L3P0CL85 134 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 GPR183P32249 361 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 CLEC19AQ6UXS0 136 aa16.34■□□□□ 0.21
VPS28-208ENST00000527797 INAFM1C9JVW0 142 aa16.33■□□□□ 0.2
VPS28-208ENST00000527797 RNASE1P07998 156 aaKnown RBP16.33■□□□□ 0.2
VPS28-208ENST00000527797 HILS1P60008 231 aa16.33■□□□□ 0.2
VPS28-208ENST00000527797 LYZP61626 148 aa16.33■□□□□ 0.2
VPS28-208ENST00000527797 GUK1Q16774 197 aa16.33■□□□□ 0.2
VPS28-208ENST00000527797 MIR17HGQ75NE6 70 aa16.33■□□□□ 0.2
VPS28-208ENST00000527797 TECRQ9NZ01 308 aaKnown RBP16.33■□□□□ 0.2
VPS28-208ENST00000527797 OTOGQ6ZRI0 2925 aa16.32■□□□□ 0.2
VPS28-208ENST00000527797 CXorf1O96002 111 aa16.32■□□□□ 0.2
VPS28-208ENST00000527797 CRYBA1P05813 215 aa16.32■□□□□ 0.2
VPS28-208ENST00000527797 S100A1P23297 94 aa16.32■□□□□ 0.2
VPS28-208ENST00000527797 RPL15P61313 204 aaKnown RBP16.32■□□□□ 0.2
VPS28-208ENST00000527797 JMJD8Q96S16 334 aa16.32■□□□□ 0.2
VPS28-208ENST00000527797 CHRDL1Q9BU40 450 aa16.32■□□□□ 0.2
VPS28-208ENST00000527797 EIF5A2Q9GZV4 153 aaKnown RBP16.32■□□□□ 0.2
VPS28-208ENST00000527797 PSMB8P28062 276 aa16.31■□□□□ 0.2
VPS28-208ENST00000527797 ADMP35318 185 aa16.31■□□□□ 0.2
VPS28-208ENST00000527797 TAS2R45P59539 299 aa16.31■□□□□ 0.2
VPS28-208ENST00000527797 TOR2AQ5JU69 321 aa16.31■□□□□ 0.2
VPS28-208ENST00000527797 TEX38Q6PEX7 206 aa16.31■□□□□ 0.2
VPS28-208ENST00000527797 Q6ZSV7 163 aa16.31■□□□□ 0.2
VPS28-208ENST00000527797 IQCF2Q8IXL9 164 aa16.31■□□□□ 0.2
VPS28-208ENST00000527797 SERTAD4Q9NUC0 356 aa16.31■□□□□ 0.2
VPS28-208ENST00000527797 GNG13Q9P2W3 67 aa16.31■□□□□ 0.2
VPS28-208ENST00000527797 SONP18583 2426 aaKnown RBP16.31■□□□□ 0.2
VPS28-208ENST00000527797 RBFOX3A6NFN3 312 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 TGOLN2O43493 480 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 C8orf88P0DMB2 117 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 SRSF3P84103 164 aaKnown RBP16.3■□□□□ 0.2
VPS28-208ENST00000527797 PEA15Q15121 130 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 LINC00305Q7Z4B0 112 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 ZNF491Q8N8L2 437 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 RNF125Q96EQ8 232 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 TMPRSS5Q9H3S3 457 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 TREM1Q9NP99 234 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 HIGD1AQ9Y241 93 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 WI2-2373I1.2A0A1W2PRP0 233 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 I3L521 148 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 OR2C1O95371 312 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 IFNA1P01562 189 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 IL4P05112 153 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 ELANEP08246 267 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 ARL14EPLP0DKL9 152 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 PSMB3P49720 205 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 FOXE3Q13461 319 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 PMS2P11Q13670 270 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 HAGHQ16775 308 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 ZNF600Q6ZNG1 722 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 LCNL1Q6ZST4 164 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 UHRF2Q96PU4 802 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 SCRT1Q9BWW7 348 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 TMEM231Q9H6L2 316 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 GNB4Q9HAV0 340 aa16.3■□□□□ 0.2
VPS28-208ENST00000527797 CD5P06127 495 aa16.29■□□□□ 0.2
VPS28-208ENST00000527797 KHDC3LQ587J8 217 aa16.29■□□□□ 0.2
VPS28-208ENST00000527797 C10orf99Q6UWK7 81 aa16.29■□□□□ 0.2
VPS28-208ENST00000527797 MRPL27Q9P0M9 148 aaKnown RBP16.29■□□□□ 0.2
VPS28-208ENST00000527797 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.28■□□□□ 0.2
VPS28-208ENST00000527797 IGHV3-11P01762 117 aa16.28■□□□□ 0.2
VPS28-208ENST00000527797 PPT1P50897 306 aa16.28■□□□□ 0.2
VPS28-208ENST00000527797 MORN5Q5VZ52 161 aa16.28■□□□□ 0.2
VPS28-208ENST00000527797 PQLC2Q6ZP29 291 aa16.28■□□□□ 0.2
VPS28-208ENST00000527797 RARRES2Q99969 163 aa16.28■□□□□ 0.2
VPS28-208ENST00000527797 PUS1Q9Y606 427 aaKnown RBP eCLIP16.28■□□□□ 0.2
VPS28-208ENST00000527797 MXRA5Q9NR99 2828 aa16.28■□□□□ 0.2
VPS28-208ENST00000527797 HIVEP2P31629 2446 aa16.28■□□□□ 0.2
VPS28-208ENST00000527797 TRAV5A0A0B4J249 113 aa16.27■□□□□ 0.2
VPS28-208ENST00000527797 GCHFRP30047 84 aa16.27■□□□□ 0.2
VPS28-208ENST00000527797 ARL3P36405 182 aa16.27■□□□□ 0.2
VPS28-208ENST00000527797 RELQ04864 619 aaPredicted RBP16.27■□□□□ 0.2
VPS28-208ENST00000527797 ZNF506Q5JVG8 444 aa16.27■□□□□ 0.2
VPS28-208ENST00000527797 ZNF343Q6P1L6 599 aa16.27■□□□□ 0.2
VPS28-208ENST00000527797 OR4X2Q8NGF9 303 aa16.27■□□□□ 0.2
VPS28-208ENST00000527797 NARS2Q96I59 477 aaKnown RBP16.27■□□□□ 0.2
VPS28-208ENST00000527797 LOC102723971A0A1B0GUV8 181 aa16.27■□□□□ 0.19
VPS28-208ENST00000527797 BCL2P10415 239 aa16.27■□□□□ 0.19
VPS28-208ENST00000527797 S100A7AQ86SG5 101 aa16.27■□□□□ 0.19
VPS28-208ENST00000527797 OR5AU1Q8NGC0 362 aa16.27■□□□□ 0.19
VPS28-208ENST00000527797 SLC25A2Q9BXI2 301 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 193.1 ms