RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 UBE2L3P68036 154 aaKnown RBP12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 SLC35B1P78383 322 aa12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 BSPH1Q075Z2 132 aa12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 IBA57Q5T440 356 aaKnown RBP12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 PDPNQ86YL7 162 aa12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 LINC00311Q8N616 119 aa12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TNFRSF14Q92956 283 aa12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 NAT8BQ9UHF3 227 aa12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 PRRG2O14669 202 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 PYYP10082 97 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CDSNQ15517 529 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 MRGPRG-AS1Q2M3A8 158 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TEX43Q6ZNM6 134 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 ZNF843Q8N446 348 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 NPIPB3Q92617 1050 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 NUDT11Q96G61 164 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 ZNF430Q9H8G1 570 aaPredicted RBP12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 ZNF355PQ9NSJ1 428 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 RNF114Q9Y508 228 aa12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 UBR5O95071 2799 aaPredicted RBP12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 FASNP49327 2511 aaKnown RBP12.95□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 IGHV3-48P01763 117 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 MT-ND6P03923 174 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 MGST1P10620 155 aaKnown RBP12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 COMPP49747 757 aaPredicted RBP12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 DLX6P56179 175 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 BATFQ16520 125 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 KIAA1644Q3SXP7 199 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 ASPHD1Q5U4P2 390 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 FAM71F2Q6NXP2 309 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 WDR73Q6P4I2 378 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TOMM20LQ6UXN7 152 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 OR10X1Q8NGY0 326 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 H1FXQ92522 213 aaKnown RBP12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 FAM168AQ92567 244 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 RITA1Q96K30 269 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 SAP30LQ9HAJ7 183 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CTSZQ9UBR2 303 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CDC42EP3Q9UKI2 254 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TCRBV4S1A1TA0A5B7 111 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TFPI2P48307 235 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 C8orf31Q8N9H6 132 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 THAP8Q8NA92 274 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 NHLRC2Q8NBF2 726 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 VSTM2AQ8TAG5 236 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TMEM186Q96B77 213 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 VPS25Q9BRG1 176 aa12.94□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 COX7A2P2O60397 106 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 APOBEC3AP31941 199 aaPredicted RBP12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 C10orf113Q5VZT2 155 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 ZNF329Q86UD4 541 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CCL17Q92583 94 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TPSG1Q9NRR2 321 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 LOC105371242A0A075B767 164 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 PLXNB1O43157 2135 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 NDUFB3O43676 98 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CA1P00915 261 aaPredicted RBP12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 AMY1AP04745 511 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 GPX1P07203 203 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 LOXP28300 417 aaPredicted RBP12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 RPS20P60866 119 aaKnown RBP12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TMEM183BQ1AE95 376 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 COX19Q49B96 90 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 RUSC1-AS1Q66K80 236 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 FXYD5Q96DB9 178 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 MBD6Q96DN6 1003 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 PAXXQ9BUH6 204 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 FBXL7Q9UJT9 491 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 WASHC3Q9Y3C0 194 aa12.93□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 HRNRQ86YZ3 2850 aaPredicted RBP12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 BMPR1BO00238 502 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 NDUFB8O95169 186 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 ZNF137PP52743 207 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 OR10J3Q5JRS4 329 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 MRPL54Q6P161 138 aaKnown RBP12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 OR1L4Q8NGR5 311 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 RCHY1Q96PM5 261 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 SERTAD4Q9NUC0 356 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 AMMECR1Q9Y4X0 333 aaPredicted RBP12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 VPS13CQ709C8 3753 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPI3 338 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 IZUMO1RA6ND01 250 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 A6NJY4 79 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CCL21O00585 134 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 RPL19P84098 196 aaKnown RBP12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 Q8N976 141 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 SAMD10Q9BYL1 202 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 JKAMPQ9P055 326 aa12.92□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CSMD1Q96PZ7 3565 aa12.91□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 SLC25A17O43808 307 aa12.91□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 REG1AP05451 166 aa12.91□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 SUB1P53999 127 aaKnown RBP eCLIP12.91□□□□□ -0.342e-7■■□□□ 14.2
MSH5-SAPCD1-208ENST00000498473 LRRC10Q5BKY1 277 aa12.91□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 ZNF835Q9Y2P0 537 aa12.91□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 AKAP6Q13023 2319 aa12.91□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CELSR2Q9HCU4 2923 aa12.91□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 ABCA4P78363 2273 aa12.91□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 MAP1AP78559 2803 aaPredicted RBP12.91□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TRAV34A0A0B4J273 112 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 PEX7O00628 323 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 789.1 ms