RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 C15orf61A6NNL5 157 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 SNURFLB1AK76 121 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 OR1L8Q8NGR8 309 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 HSPB9Q9BQS6 159 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 MRPL18Q9H0U6 180 aaKnown RBP4.34□□□□□ -1.72
SYNE1-220ENST00000471834 IDI2-AS1Q9NZ38 188 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 INSIG2Q9Y5U4 225 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 RTTNQ86VV8 2226 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 IGKV1D-37A0A075B6S9 117 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 TMEM238C9JI98 176 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 GNG7O60262 68 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 NDUFB4O95168 129 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 PRB4P10163 310 aaPredicted RBP4.34□□□□□ -1.72
SYNE1-220ENST00000471834 FXYD3Q14802 87 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF672Q499Z4 452 aaPredicted RBP4.34□□□□□ -1.72
SYNE1-220ENST00000471834 GUCD1Q96NT3 240 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 IL19Q9UHD0 177 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 HIGD1AQ9Y241 93 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 F11RQ9Y624 299 aaKnown RBP4.34□□□□□ -1.72
SYNE1-220ENST00000471834 C2orf16Q68DN1 1984 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 A0A1B0GUS0 222 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 SYNGR1O43759 233 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 TMEM177Q53S58 311 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 BVES-AS1Q5T3Y7 98 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 SAP25Q8TEE9 199 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 HARBI1Q96MB7 349 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF48Q96MX3 618 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-220ENST00000471834 GTF3C1Q12789 2109 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 HSPE1P61604 102 aaKnown RBP4.33□□□□□ -1.72
SYNE1-220ENST00000471834 TCF15Q12870 199 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 ATP1A1-AS1Q5TC04 95 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 PLAUP00749 431 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 PRB3Q04118 309 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-220ENST00000471834 C16orf92Q96LL3 132 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 CCL13Q99616 98 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 SPATA25Q9BR10 227 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 TM2D2Q9BX73 214 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF552Q9H707 407 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-220ENST00000471834 HOXA3O43365 443 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-220ENST00000471834 GDF9O60383 454 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 RIGQ13278 110 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 LY6EQ16553 131 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 OR4A47Q6IF82 309 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 TEX45Q8NA69 505 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 RABAC1Q9UI14 185 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 PRO0461Q9UI25 63 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 TCF19Q9Y242 345 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 KIAA2026Q5HYC2 2103 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 ARL14EPLP0DKL9 152 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 TFF3Q07654 80 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 CCDC144NLQ6NUI1 221 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 TEPPQ6URK8 271 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 VGLL1Q99990 258 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 PAXXQ9BUH6 204 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 CSTL1Q9H114 145 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 THYN1Q9P016 225 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 M0QXV9 152 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 COL8A1P27658 744 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 PATE2Q6UY27 113 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 ADTRPQ96IZ2 230 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 SCRT2Q9NQ03 307 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 TMEM14CQ9P0S9 112 aa4.33□□□□□ -1.72
SYNE1-220ENST00000471834 OR2H2O95918 312 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 NUDT3O95989 172 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF883P0CG24 379 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 SRSF2Q01130 221 aaKnown RBP4.32□□□□□ -1.72
SYNE1-220ENST00000471834 SCGB1D4Q6XE38 83 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 STARD4Q96DR4 205 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 RNF7Q9UBF6 113 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 PCSK5Q92824 1860 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 K7ERU9 68 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 LHBP01229 141 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 LIPFP07098 398 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 MAJINQ3KP22 176 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 HCP5Q6MZN7 132 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 ATOH7Q8N100 152 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 OR9G4Q8NGQ1 327 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 TMEM167AQ8TBQ9 72 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 TMUB1Q9BVT8 246 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 EPOPA6NHQ4 379 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 IGLV2-11P01706 119 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 IGHV3-48P01763 117 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 AMY1AP04745 511 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 RP1L1Q8IWN7 2480 aaPredicted RBP4.32□□□□□ -1.72
SYNE1-220ENST00000471834 SGK494Q96LW2 274 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF747Q9BV97 191 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 DIRC3C9JPN6 131 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 F2Z2F3 143 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 HBZP02008 142 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 CBLN1P23435 193 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 PRDX2P32119 198 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF826PQ6ZT77 177 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 SBSPONQ8IVN8 264 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 OR8I2Q8N0Y5 310 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 RAB37Q96AX2 223 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 IGKV3OR2-268A0A0C4DH90 116 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 COX8AP10176 69 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 SLAQ13239 276 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 FAM110DQ8TAY7 271 aaPredicted RBP4.32□□□□□ -1.72
SYNE1-220ENST00000471834 SNRNP40Q96DI7 357 aaKnown RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms