RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ZNF90Q03938 601 aa13.5□□□□□ -0.25
CLN3-202ENST00000355477 DHRS2Q13268 280 aa13.5□□□□□ -0.25
CLN3-202ENST00000355477 LYG2Q86SG7 212 aa13.5□□□□□ -0.25
CLN3-202ENST00000355477 OR51G1Q8NGK1 321 aa13.5□□□□□ -0.25
CLN3-202ENST00000355477 GRAMD2BQ96HH9 432 aa13.5□□□□□ -0.25
CLN3-202ENST00000355477 SLC35E1Q96K37 410 aa13.5□□□□□ -0.25
CLN3-202ENST00000355477 PAIP2BQ9ULR5 123 aaKnown RBP13.5□□□□□ -0.25
CLN3-202ENST00000355477 RYR2Q92736 4967 aa13.5□□□□□ -0.25
CLN3-202ENST00000355477 ZFP92A6NM28 416 aa13.49□□□□□ -0.25
CLN3-202ENST00000355477 CENPXA8MT69 81 aa13.49□□□□□ -0.25
CLN3-202ENST00000355477 PLA2G10O15496 165 aa13.49□□□□□ -0.25
CLN3-202ENST00000355477 RAB11AP62491 216 aa13.49□□□□□ -0.25
CLN3-202ENST00000355477 C7orf50Q9BRJ6 194 aaKnown RBP13.49□□□□□ -0.25
CLN3-202ENST00000355477 IGKV1OR2-108A0A075B7D4 117 aa13.48□□□□□ -0.25
CLN3-202ENST00000355477 BUB3O43684 328 aa13.48□□□□□ -0.25
CLN3-202ENST00000355477 ZNF688P0C7X2 276 aa13.48□□□□□ -0.25
CLN3-202ENST00000355477 ID3Q02535 119 aa13.48□□□□□ -0.25
CLN3-202ENST00000355477 HELTA6NFD8 242 aa13.47□□□□□ -0.25
CLN3-202ENST00000355477 PRSS46E5RG02 174 aa13.47□□□□□ -0.25
CLN3-202ENST00000355477 C4orf46Q504U0 113 aa13.47□□□□□ -0.25
CLN3-202ENST00000355477 RNF125Q96EQ8 232 aa13.47□□□□□ -0.25
CLN3-202ENST00000355477 CIB3Q96Q77 187 aaPredicted RBP13.47□□□□□ -0.25
CLN3-202ENST00000355477 PBDC1Q9BVG4 233 aa13.47□□□□□ -0.25
CLN3-202ENST00000355477 DNAH1Q9P2D7 4330 aa13.46□□□□□ -0.25
CLN3-202ENST00000355477 KNCNA6PVL3 124 aa13.46□□□□□ -0.25
CLN3-202ENST00000355477 H3BP45 60 aa13.46□□□□□ -0.25
CLN3-202ENST00000355477 EIF2B2P49770 351 aaKnown RBP13.46□□□□□ -0.25
CLN3-202ENST00000355477 POLR2GP62487 172 aaKnown RBP eCLIP13.46□□□□□ -0.25
CLN3-202ENST00000355477 OR2F1Q13607 317 aa13.46□□□□□ -0.25
CLN3-202ENST00000355477 SPANXN5Q5MJ07 72 aa13.46□□□□□ -0.25
CLN3-202ENST00000355477 THAP8Q8NA92 274 aa13.46□□□□□ -0.25
CLN3-202ENST00000355477 COQ8AQ8NI60 647 aa13.46□□□□□ -0.25
CLN3-202ENST00000355477 CA1P00915 261 aaPredicted RBP13.45□□□□□ -0.26
CLN3-202ENST00000355477 AP2S1P53680 142 aaPredicted RBP13.45□□□□□ -0.26
CLN3-202ENST00000355477 RPP30P78346 268 aaKnown RBP13.45□□□□□ -0.26
CLN3-202ENST00000355477 SIGLEC15Q6ZMC9 328 aa13.45□□□□□ -0.26
CLN3-202ENST00000355477 STHQ8IWL8 128 aa13.45□□□□□ -0.26
CLN3-202ENST00000355477 OR4D5Q8NGN0 318 aa13.45□□□□□ -0.26
CLN3-202ENST00000355477 TRGV9Q99603 122 aa13.45□□□□□ -0.26
CLN3-202ENST00000355477 PLECQ15149 4684 aaKnown RBP13.45□□□□□ -0.26
CLN3-202ENST00000355477 LYRM1O43325 122 aa13.44□□□□□ -0.26
CLN3-202ENST00000355477 IFNA21P01568 189 aa13.44□□□□□ -0.26
CLN3-202ENST00000355477 GIG44P09565 113 aaPredicted RBP13.44□□□□□ -0.26
CLN3-202ENST00000355477 LYZP61626 148 aa13.44□□□□□ -0.26
CLN3-202ENST00000355477 TRPT1Q86TN4 253 aaKnown RBP13.44□□□□□ -0.26
CLN3-202ENST00000355477 GATAD1Q8WUU5 269 aa13.44□□□□□ -0.26
CLN3-202ENST00000355477 RARRES2Q99969 163 aa13.44□□□□□ -0.26
CLN3-202ENST00000355477 NRN1Q9NPD7 142 aa13.44□□□□□ -0.26
CLN3-202ENST00000355477 STRAPQ9Y3F4 350 aaKnown RBP13.44□□□□□ -0.26
CLN3-202ENST00000355477 SNRPGP15A8MWD9 76 aa13.43□□□□□ -0.26
CLN3-202ENST00000355477 NKX2-1P43699 371 aaPredicted RBP13.43□□□□□ -0.26
CLN3-202ENST00000355477 PMS2P11Q13670 270 aa13.43□□□□□ -0.26
CLN3-202ENST00000355477 PSMG4Q5JS54 123 aa13.43□□□□□ -0.26
CLN3-202ENST00000355477 ACTL10Q5JWF8 245 aa13.43□□□□□ -0.26
CLN3-202ENST00000355477 OR8G2PQ6IF36 304 aa13.43□□□□□ -0.26
CLN3-202ENST00000355477 OR11H2Q8NH07 326 aa13.43□□□□□ -0.26
CLN3-202ENST00000355477 MITD1Q8WV92 249 aa13.43□□□□□ -0.26
CLN3-202ENST00000355477 RAB40CQ96S21 281 aa13.43□□□□□ -0.26
CLN3-202ENST00000355477 C20orf85Q9H1P6 137 aa13.43□□□□□ -0.26
CLN3-202ENST00000355477 FABP1P07148 127 aa13.42□□□□□ -0.26
CLN3-202ENST00000355477 PAX9P55771 341 aa13.42□□□□□ -0.26
CLN3-202ENST00000355477 CNPY1Q3B7I2 92 aa13.42□□□□□ -0.26
CLN3-202ENST00000355477 PSENENQ9NZ42 101 aa13.42□□□□□ -0.26
CLN3-202ENST00000355477 PMS2P5A8MQ11 134 aa13.41□□□□□ -0.26
CLN3-202ENST00000355477 SSSCA1O60232 199 aa13.41□□□□□ -0.26
CLN3-202ENST00000355477 TCRBP04435 133 aa13.41□□□□□ -0.26
CLN3-202ENST00000355477 GATA2P23769 480 aaPredicted RBP13.41□□□□□ -0.26
CLN3-202ENST00000355477 IAH1Q2TAA2 248 aaPredicted RBP13.41□□□□□ -0.26
CLN3-202ENST00000355477 GSG1LQ6UXU4 331 aa13.41□□□□□ -0.26
CLN3-202ENST00000355477 TMEM182Q6ZP80 229 aaPredicted RBP13.41□□□□□ -0.26
CLN3-202ENST00000355477 SMIM8Q96KF7 97 aa13.41□□□□□ -0.26
CLN3-202ENST00000355477 WDR12Q9GZL7 423 aaKnown RBP13.41□□□□□ -0.26
CLN3-202ENST00000355477 ALMS1Q8TCU4 4167 aa13.4□□□□□ -0.26
CLN3-202ENST00000355477 TRAV6A0A075B6T7 132 aa13.4□□□□□ -0.26
CLN3-202ENST00000355477 CXorf65A6NEN9 183 aa13.4□□□□□ -0.26
CLN3-202ENST00000355477 CCNKO75909 580 aa13.4□□□□□ -0.26
CLN3-202ENST00000355477 ATF4P18848 351 aaPredicted RBP13.4□□□□□ -0.26
CLN3-202ENST00000355477 C4BPBP20851 252 aa13.4□□□□□ -0.26
CLN3-202ENST00000355477 NUP62P37198 522 aaPredicted RBP13.4□□□□□ -0.26
CLN3-202ENST00000355477 ACOT7LQ6ZUV0 252 aa13.4□□□□□ -0.26
CLN3-202ENST00000355477 ZBTB8BQ8NAP8 495 aaPredicted RBP13.4□□□□□ -0.26
CLN3-202ENST00000355477 SEPSECSQ9HD40 501 aaKnown RBP13.4□□□□□ -0.26
CLN3-202ENST00000355477 GSKIPQ9P0R6 139 aa13.4□□□□□ -0.26
CLN3-202ENST00000355477 PFDN2Q9UHV9 154 aa13.4□□□□□ -0.26
CLN3-202ENST00000355477 SCGB1D2O95969 90 aa13.39□□□□□ -0.27
CLN3-202ENST00000355477 SNRPD3P62318 126 aaKnown RBP13.39□□□□□ -0.27
CLN3-202ENST00000355477 C1orf194Q5T5A4 169 aa13.39□□□□□ -0.27
CLN3-202ENST00000355477 CCDC32Q9BV29 185 aa13.39□□□□□ -0.27
CLN3-202ENST00000355477 CCSO14618 274 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 DEFB4AO15263 64 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 SPP1P10451 314 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 AKR1C1Q04828 323 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 MORN3Q6PF18 240 aaPredicted RBP13.38□□□□□ -0.27
CLN3-202ENST00000355477 TMEM14EPQ6UXP3 125 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 TMEM144Q7Z5S9 345 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 TMEM217Q8N7C4 229 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 PPP1R14BQ96C90 147 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 SEC22CQ9BRL7 303 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 NUDT15Q9NV35 164 aa13.38□□□□□ -0.27
CLN3-202ENST00000355477 RCL1Q9Y2P8 373 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms