RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 IGF2BP2-AS1Q96M15 143 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 CCDC115Q96NT0 180 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 ERMAPQ96PL5 475 aaPredicted RBP1.23□□□□□ -2.21
CD44-239ENST00000639002 YPEL2Q96QA6 119 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 MIEN1Q9BRT3 115 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 GINS4Q9BRT9 223 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 TSSK6Q9BXA6 273 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 TCEAL2Q9H3H9 227 aaPredicted RBP1.23□□□□□ -2.21
CD44-239ENST00000639002 RNF122Q9H9V4 155 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 IL36BQ9NZH7 164 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 PCTPQ9UKL6 214 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 FUT9Q9Y231 359 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 AMMECR1Q9Y4X0 333 aaPredicted RBP1.23□□□□□ -2.21
CD44-239ENST00000639002 HYDINQ4G0P3 5121 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 DOCK3Q8IZD9 2030 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 RPRD2Q5VT52 1461 aaKnown RBP1.23□□□□□ -2.21
CD44-239ENST00000639002 FSIP2Q5CZC0 6907 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 NUP210LQ5VU65 1888 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 NUP210Q8TEM1 1887 aaPredicted RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 POLQO75417 2590 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 SIPA1L1O43166 1804 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 ZFYVE26Q68DK2 2539 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 BIRC6Q9NR09 4857 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 MAST2Q6P0Q8 1798 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 TRAV36DV7A0A075B6V5 113 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 A0A087X0T9 212 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 TRAV5A0A0B4J249 113 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 A0A0B4J2C4 111 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 A0A1B0GX51 115 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 TLCD2A6NGC4 264 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 FABP5P3A8MUU1 101 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 A8MWP4 228 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 C1orf196B1AJZ1 125 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 C5orf58C9J3I9 102 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 E7EQL1 145 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 H3BMM0 161 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 H3BQ85 93 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 PSCAO43653 123 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 NPYP01303 97 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 IGKV1D-33P01593 117 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 IGKV1-33P01594 117 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 IGHV1-69P01742 117 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 APOC1P02654 83 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 C1QAP02745 245 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 INAFM2P0DMQ5 153 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 HRES1P13985 223 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 CRHBPP24387 322 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 NFYBP25208 207 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 POLR2HP52434 150 aaKnown RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 KRTAP12-1P59990 96 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 MYL5Q02045 173 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 RPL18Q07020 188 aaKnown RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 OR8B8Q15620 311 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 LTC4SQ16873 150 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 RTL8BQ17RB0 113 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 RRN3P1Q2M238 152 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 AADACL3Q5VUY0 350 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 FKBP1CQ5VVH2 108 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 ZNF322Q6U7Q0 402 aaPredicted RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 ZNF705AQ6ZN79 300 aaPredicted RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 LCA10Q71F78 164 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 ZNF767PQ75MW2 155 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 ZFAND2AQ8N6M9 145 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 ZNF283Q8N7M2 679 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 ZFP62Q8NB50 900 aaPredicted RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 Q8NDZ9 215 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 CANT1Q8WVQ1 401 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 MAGOHBQ96A72 148 aaKnown RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 UBE2WQ96B02 151 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 ADAT3Q96EY9 351 aaPredicted RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 BORCS8Q96FH0 119 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 AP1S3Q96PC3 154 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 LXNQ9BS40 222 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 RTL8AQ9BWD3 113 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 TUBA4BQ9H853 241 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 TPT1P8Q9HAU6 139 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 CACYBPQ9HB71 228 aaKnown RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 HSPB8Q9UJY1 196 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 KLK5Q9Y337 293 aaPredicted RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 FAM208BQ5VWN6 2430 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 CREBBPQ92793 2442 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 PRR14LQ5THK1 2151 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 ATRQ13535 2644 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 DENND4BO75064 1496 aaPredicted RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 NEO1Q92859 1461 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 RYR2Q92736 4967 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 SPATA31E1Q6ZUB1 1445 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 FLNCQ14315 2725 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 HECW1Q76N89 1606 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 XIRP1Q702N8 1843 aaKnown RBP1.22□□□□□ -2.21
CD44-239ENST00000639002 SPEF2Q9C093 1822 aa1.22□□□□□ -2.21
CD44-239ENST00000639002 BOD1L1Q8NFC6 3051 aa1.21□□□□□ -2.21
CD44-239ENST00000639002 ROCK2O75116 1388 aaKnown RBP1.21□□□□□ -2.21
CD44-239ENST00000639002 FLNAP21333 2647 aaKnown RBP1.21□□□□□ -2.22
CD44-239ENST00000639002 ADAMTSL1Q8N6G6 1762 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 PTPRJQ12913 1337 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 MYH7BA7E2Y1 1941 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 PLXND1Q9Y4D7 1925 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 PIK3C2AO00443 1686 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 NCAPD3P42695 1498 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms