RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 ZNF79Q15937 498 aa12.63□□□□□ -0.39
HMGN3-203ENST00000620514 NMSQ5H8A3 153 aa12.63□□□□□ -0.39
HMGN3-203ENST00000620514 RNASEH2CQ8TDP1 164 aaKnown RBP12.63□□□□□ -0.39
HMGN3-203ENST00000620514 METTL26Q96S19 204 aa12.63□□□□□ -0.39
HMGN3-203ENST00000620514 TRAV30A0A087WSZ9 112 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 A0A0B4J2A0 478 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 SCGB2A1O75556 95 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 SLC25A4P12235 298 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 CRYBB3P26998 211 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 P2RY1P47900 373 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 CCR6P51684 374 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 DEFB131AP59861 70 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 TNFRSF9Q07011 255 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 PMS2P11Q13670 270 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 SMCO1Q147U7 214 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 LEMD1Q68G75 181 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 TMED4Q7Z7H5 227 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 LGI3Q8N145 548 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 TOMM5Q8N4H5 51 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 OR1S2Q8NGQ3 325 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 CSTL1Q9H114 145 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 RBKSQ9H477 322 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 TMEM231Q9H6L2 316 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 HSPB7Q9UBY9 170 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 SHPKQ9UHJ6 478 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 RABAC1Q9UI14 185 aa12.62□□□□□ -0.39
HMGN3-203ENST00000620514 A0A1W2PS18 150 aa12.61□□□□□ -0.39
HMGN3-203ENST00000620514 MPTX1A8MV57 137 aa12.61□□□□□ -0.39
HMGN3-203ENST00000620514 JTBO76095 146 aa12.61□□□□□ -0.39
HMGN3-203ENST00000620514 OR10J1P30954 320 aa12.61□□□□□ -0.39
HMGN3-203ENST00000620514 FAUP35544 74 aaKnown RBP12.61□□□□□ -0.39
HMGN3-203ENST00000620514 STXBP6Q8NFX7 210 aa12.61□□□□□ -0.39
HMGN3-203ENST00000620514 NPIPB3Q92617 1050 aa12.61□□□□□ -0.39
HMGN3-203ENST00000620514 RBM38Q9H0Z9 239 aaKnown RBP12.61□□□□□ -0.39
HMGN3-203ENST00000620514 ALMS1Q8TCU4 4167 aa12.61□□□□□ -0.39
HMGN3-203ENST00000620514 TRAV2A0A0B4J234 112 aa12.6□□□□□ -0.39
HMGN3-203ENST00000620514 CXorf65A6NEN9 183 aa12.6□□□□□ -0.39
HMGN3-203ENST00000620514 IFNA10P01566 189 aa12.6□□□□□ -0.39
HMGN3-203ENST00000620514 ANXA3P12429 323 aa12.6□□□□□ -0.39
HMGN3-203ENST00000620514 LCE2DQ5TA82 110 aaPredicted RBP12.6□□□□□ -0.39
HMGN3-203ENST00000620514 DTD1Q8TEA8 209 aa12.6□□□□□ -0.39
HMGN3-203ENST00000620514 Q8WTZ3 238 aa12.6□□□□□ -0.39
HMGN3-203ENST00000620514 ACY3Q96HD9 319 aa12.6□□□□□ -0.39
HMGN3-203ENST00000620514 U3KQE9 123 aa12.6□□□□□ -0.39
HMGN3-203ENST00000620514 K7EQG2 157 aa12.59□□□□□ -0.39
HMGN3-203ENST00000620514 AP3S2P59780 193 aa12.59□□□□□ -0.39
HMGN3-203ENST00000620514 YPEL3P61236 119 aaPredicted RBP12.59□□□□□ -0.39
HMGN3-203ENST00000620514 SRPXP78539 464 aa12.59□□□□□ -0.39
HMGN3-203ENST00000620514 ETFRF1Q6IPR1 90 aa12.59□□□□□ -0.39
HMGN3-203ENST00000620514 CCDC190Q86UF4 302 aa12.59□□□□□ -0.39
HMGN3-203ENST00000620514 OR1S1Q8NH92 325 aa12.59□□□□□ -0.39
HMGN3-203ENST00000620514 CACFD1Q9UGQ2 172 aa12.59□□□□□ -0.39
HMGN3-203ENST00000620514 EPPK1P58107 5090 aaKnown RBP12.58□□□□□ -0.4
HMGN3-203ENST00000620514 S100A5P33763 92 aa12.58□□□□□ -0.4
HMGN3-203ENST00000620514 USF2Q15853 346 aaPredicted RBP12.58□□□□□ -0.4
HMGN3-203ENST00000620514 NOXA1Q86UR1 476 aa12.58□□□□□ -0.4
HMGN3-203ENST00000620514 NARS2Q96I59 477 aaKnown RBP12.58□□□□□ -0.4
HMGN3-203ENST00000620514 U3KQ87 197 aa12.58□□□□□ -0.4
HMGN3-203ENST00000620514 IL4P05112 153 aa12.57□□□□□ -0.4
HMGN3-203ENST00000620514 HNRNPCP07910 306 aaKnown RBP eCLIP12.57□□□□□ -0.4
HMGN3-203ENST00000620514 ZNF688P0C7X2 276 aa12.57□□□□□ -0.4
HMGN3-203ENST00000620514 VAMP1P23763 118 aa12.57□□□□□ -0.4
HMGN3-203ENST00000620514 TMEM128Q5BJH2 165 aa12.57□□□□□ -0.4
HMGN3-203ENST00000620514 C16orf54Q6UWD8 224 aa12.57□□□□□ -0.4
HMGN3-203ENST00000620514 DCANP1Q8TF63 244 aa12.57□□□□□ -0.4
HMGN3-203ENST00000620514 GLMPQ8WWB7 406 aa12.57□□□□□ -0.4
HMGN3-203ENST00000620514 GRAMD2BQ96HH9 432 aa12.57□□□□□ -0.4
HMGN3-203ENST00000620514 RARRES2Q99969 163 aa12.57□□□□□ -0.4
HMGN3-203ENST00000620514 KNCNA6PVL3 124 aa12.56□□□□□ -0.4
HMGN3-203ENST00000620514 PITX3O75364 302 aa12.56□□□□□ -0.4
HMGN3-203ENST00000620514 TOMM40O96008 361 aa12.56□□□□□ -0.4
HMGN3-203ENST00000620514 CA1P00915 261 aaPredicted RBP12.56□□□□□ -0.4
HMGN3-203ENST00000620514 IFNA4P05014 189 aa12.56□□□□□ -0.4
HMGN3-203ENST00000620514 RD3LP0DJH9 198 aa12.56□□□□□ -0.4
HMGN3-203ENST00000620514 GATAD1Q8WUU5 269 aa12.56□□□□□ -0.4
HMGN3-203ENST00000620514 DUXBA0A1W2PPF3 345 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 SFT2D2O95562 160 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 IAPPP10997 89 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 PSG1P11464 419 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 ATF4P18848 351 aaPredicted RBP12.55□□□□□ -0.4
HMGN3-203ENST00000620514 PPP1R1AQ13522 171 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 STHQ8IWL8 128 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 LRTM2Q8N967 370 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 OR11H2Q8NH07 326 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 SLC25A21Q9BQT8 299 aaPredicted RBP12.55□□□□□ -0.4
HMGN3-203ENST00000620514 SRRQ9GZT4 340 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 AGRNO00468 2067 aa12.55□□□□□ -0.4
HMGN3-203ENST00000620514 NUPR2A6NF83 97 aa12.54□□□□□ -0.4
HMGN3-203ENST00000620514 GIG44P09565 113 aaPredicted RBP12.54□□□□□ -0.4
HMGN3-203ENST00000620514 DHRS2Q13268 280 aa12.54□□□□□ -0.4
HMGN3-203ENST00000620514 GAMTQ14353 236 aa12.54□□□□□ -0.4
HMGN3-203ENST00000620514 CEMP1Q6PRD7 247 aaPredicted RBP12.54□□□□□ -0.4
HMGN3-203ENST00000620514 TRPT1Q86TN4 253 aaKnown RBP12.54□□□□□ -0.4
HMGN3-203ENST00000620514 TMEM217Q8N7C4 229 aa12.54□□□□□ -0.4
HMGN3-203ENST00000620514 OR51G1Q8NGK1 321 aa12.54□□□□□ -0.4
HMGN3-203ENST00000620514 IGKV1D-37A0A075B6S9 117 aa12.53□□□□□ -0.4
HMGN3-203ENST00000620514 HELTA6NFD8 242 aa12.53□□□□□ -0.4
HMGN3-203ENST00000620514 DEFB4AO15263 64 aa12.53□□□□□ -0.4
HMGN3-203ENST00000620514 CENPSQ8N2Z9 138 aa12.53□□□□□ -0.4
HMGN3-203ENST00000620514 DEDD2Q8WXF8 326 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 183.5 ms