RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 PTRHD1Q6GMV3 140 aaKnown RBP0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 LPCAT3Q6P1A2 487 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 C20orf196Q8IYI0 205 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 LRRC25Q8N386 305 aaPredicted RBP0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 SIGLECL1Q8N7X8 197 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 OR13C4Q8NGS5 318 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 H1FXQ92522 213 aaKnown RBP0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 DCUN1D1Q96GG9 259 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 ARL5BQ96KC2 179 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 PPP1R2P1Q96PQ5 205 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 AMELYQ99218 206 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 PRTFDC1Q9NRG1 225 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 ECM29Q5VYK3 1845 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 SNAPC4Q5SXM2 1469 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 PLXND1Q9Y4D7 1925 aa0.4□□□□□ -2.35
SMCHD1-207ENST00000581711 ZNF106Q9H2Y7 1883 aaKnown RBP0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 MYO9AB2RTY4 2548 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 RIC1Q4ADV7 1423 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 FLNBO75369 2602 aaKnown RBP0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 SCN3AQ9NY46 2000 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 TRAV9-1A0A075B6T8 112 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 DPRXA6NFQ7 191 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 M0R2N4 97 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 FAAHO00519 579 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 UBL3O95164 117 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 IFNA10P01566 189 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 IFNA16P05015 189 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 HIST1H1TP22492 207 aaPredicted RBP0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 RPS20P60866 119 aaKnown RBP0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 SNRPD2P62316 118 aaKnown RBP0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 IMPG1Q17R60 797 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 SPOPLQ6IQ16 392 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 ANKRD29Q8N6D5 301 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 SFT2D1Q8WV19 159 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 NIPSNAP1Q9BPW8 284 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 PARVGQ9HBI0 331 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 CDC42SE1Q9NRR8 79 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 SLC39A9Q9NUM3 307 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 VPS29Q9UBQ0 182 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 NOSIPQ9Y314 301 aaKnown RBP0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 ADCY9O60503 1353 aa0.39□□□□□ -2.35
SMCHD1-207ENST00000581711 HECW2Q9P2P5 1572 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 NUP155O75694 1391 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 EXOC1LA0A1B0GW35 172 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 CLDN24A6NM45 220 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 PIRO00625 290 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 CHP2O43745 196 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 CRYZL1O95825 349 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 SERPINA6P08185 405 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 KRTAP2-3P0C7H8 128 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 COX6A1P12074 109 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 RPL5P46777 297 aaKnown RBP0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 OMPP47874 163 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 CEBPGP53567 150 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 RHOGP84095 191 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 DEFB113Q30KQ7 82 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 ACOT6Q3I5F7 207 aaPredicted RBP0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 TRAPPC5Q8IUR0 188 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 CLDN22Q8N7P3 220 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 TOMM6Q96B49 74 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 CCDC42Q96M95 316 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 CMSS1Q9BQ75 279 aaKnown RBP0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 KRTAP2-4Q9BYR9 128 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 TAS2R4Q9NYW5 299 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 ERGIC3Q9Y282 383 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 TMEM56-RWDD3S4R434 201 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 DOCK3Q8IZD9 2030 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 MYH7BA7E2Y1 1941 aa0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 TNRC18O15417 2968 aaPredicted RBP0.38□□□□□ -2.35
SMCHD1-207ENST00000581711 WRNQ14191 1432 aaPredicted RBP eCLIP0.38□□□□□ -2.351e-10■■■■■ 128
SMCHD1-207ENST00000581711 MYH10P35580 1976 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 SCN10AQ9Y5Y9 1956 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 MTUS2Q5JR59 1369 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 MEGF8Q7Z7M0 2845 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 OR4C46A6NHA9 309 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 GOLGA6L19H0YKK7 550 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 INE1O15225 51 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 SULT1B1O43704 296 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 RPP14O95059 124 aaKnown RBP0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 TCL1BO95988 128 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 TTRP02766 147 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 RBP1P09455 135 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 BAALC-AS2P0C853 105 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 SMIM10L2AP0DMW4 78 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 SMIM10L2BP0DMW5 78 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 CDC42P60953 191 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 ITGB3BPQ13352 177 aaPredicted RBP0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 TRAPPC6BQ86SZ2 158 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 KRT222Q8N1A0 295 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 HIST3H2BBQ8N257 126 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 BORCS7Q96B45 105 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 C8orf76Q96K31 380 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 TSPAN32Q96QS1 320 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 PARD6GQ9BYG4 376 aaPredicted RBP0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 C20orf27Q9GZN8 174 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 CCDC90BQ9GZT6 254 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 MIXL1Q9H2W2 232 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 MRPL27Q9P0M9 148 aaKnown RBP0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 PEAK1Q9H792 1746 aa0.37□□□□□ -2.35
SMCHD1-207ENST00000581711 KALRNO60229 2985 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 466.8 ms