RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CLDN25C9JDP6 229 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 J3QQQ9 107 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 SLC22A1O15245 554 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 CIAO1O76071 339 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 S1PR2O95136 353 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 IFNA10P01566 189 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 P0DMU3 169 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 FAM231AP0DMU4 169 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 FAM231CP0DMU5 169 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 IFI30P13284 250 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 ERP29P30040 261 aaKnown RBP1.55□□□□□ -2.16
SCFD1-221ENST00000556534 SRIP30626 198 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 RPL26P61254 145 aaKnown RBP1.55□□□□□ -2.16
SCFD1-221ENST00000556534 KTN1-AS1Q86SY8 53 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 LRRC28Q86X40 367 aaPredicted RBP1.55□□□□□ -2.16
SCFD1-221ENST00000556534 BPIFA4PQ86YQ2 179 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 CLVS1Q8IUQ0 354 aaPredicted RBP1.55□□□□□ -2.16
SCFD1-221ENST00000556534 PFN4Q8NHR9 129 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 GNPDA2Q8TDQ7 276 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 TXNDC17Q9BRA2 123 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 GID8Q9NWU2 228 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 RPL26L1Q9UNX3 145 aaKnown RBP1.55□□□□□ -2.16
SCFD1-221ENST00000556534 MIA2Q96PC5 1412 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 CDK13Q14004 1512 aaKnown RBP1.55□□□□□ -2.16
SCFD1-221ENST00000556534 RNF17Q9BXT8 1623 aaKnown RBP1.55□□□□□ -2.16
SCFD1-221ENST00000556534 MAST4O15021 2626 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 ANKRD11Q6UB99 2663 aaPredicted RBP1.54□□□□□ -2.16
SCFD1-221ENST00000556534 OBSL1O75147 1896 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 H3BRN7 92 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 HMGB3O15347 200 aaKnown RBP1.54□□□□□ -2.16
SCFD1-221ENST00000556534 SHBGP04278 402 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 ATP5G3P48201 142 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 EIF2B2P49770 351 aaKnown RBP1.54□□□□□ -2.16
SCFD1-221ENST00000556534 TMEM258P61165 79 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 LINC01554Q52M75 96 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 LCA10Q71F78 164 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 MIR17HGQ75NE6 70 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 NEK7Q8TDX7 302 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 GPR146Q96CH1 333 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 HSPB9Q9BQS6 159 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 KRTAP4-1Q9BYQ7 146 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 ERGIC3Q9Y282 383 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 PXDNLA1KZ92 1463 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 MED14O60244 1454 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 PBRM1Q86U86 1689 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 NUP210LQ5VU65 1888 aa1.54□□□□□ -2.16
SCFD1-221ENST00000556534 BDP1A6H8Y1 2624 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 LAMA2P24043 3122 aaKnown RBP1.53□□□□□ -2.16
SCFD1-221ENST00000556534 HMSDA8MTL9 139 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 ATG12O94817 140 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 NAPSAO96009 420 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 RANBP2P49792 3224 aaKnown RBP1.53□□□□□ -2.16
SCFD1-221ENST00000556534 BRCA2P51587 3418 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 DEFB103AP81534 67 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 SLC38A11Q08AI6 406 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 FRMPD1Q5SYB0 1578 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 TMED4Q7Z7H5 227 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 SMIM20Q8N5G0 67 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 C9orf163Q8N9P6 203 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 RNASE11Q8TAA1 199 aaKnown RBP1.53□□□□□ -2.16
SCFD1-221ENST00000556534 CHD6Q8TD26 2715 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 DNAJC9Q8WXX5 260 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 C2orf50Q96LR7 162 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 SCGB3A1Q96QR1 104 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 RNF122Q9H9V4 155 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 SLC39A9Q9NUM3 307 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 TVP23BQ9NYZ1 205 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 SS18L2Q9UHA2 77 aa1.53□□□□□ -2.16
SCFD1-221ENST00000556534 UTP11Q9Y3A2 253 aaKnown RBP1.53□□□□□ -2.16
SCFD1-221ENST00000556534 ROBO1Q9Y6N7 1651 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 MKI67P46013 3256 aaKnown RBP1.52□□□□□ -2.17
SCFD1-221ENST00000556534 GLI3P10071 1580 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 MAGI2Q86UL8 1455 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 DISP2A7MBM2 1401 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 UACAQ9BZF9 1416 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 FBN3Q75N90 2809 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 TRBV19A0A075B6N1 114 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 IGKV1-9A0A0C4DH69 117 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 MEIS3P1A6NDR6 274 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 IFNA1P01562 189 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 C1QCP02747 245 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 FABP1P07148 127 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 TRGC1P0CF51 173 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 NFYAP23511 347 aaPredicted RBP1.52□□□□□ -2.17
SCFD1-221ENST00000556534 CRYBA4P53673 196 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 FXYD2P54710 66 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 PIGPP57054 158 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 TAS2R41P59536 307 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 B2MP61769 119 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 GNG3P63215 75 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 POU6F1Q14863 301 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 ARHGAP11BQ3KRB8 267 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 STX12Q86Y82 276 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 SIGLECL1Q8N7X8 197 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 WFDC5Q8TCV5 224 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 DCANP1Q8TF63 244 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 C11orf40Q8WZ69 217 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 ADAT3Q96EY9 351 aaPredicted RBP1.52□□□□□ -2.17
SCFD1-221ENST00000556534 GINS3Q9BRX5 216 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 MED29Q9NX70 200 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms