RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MAP1LC3CQ9BXW4 147 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 IL36BQ9NZH7 164 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 YTHDF2Q9Y5A9 579 aaKnown RBP13.36□□□□□ -0.27
CUX1-213ENST00000549414 EML6Q6ZMW3 1958 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 PRRC2CQ9Y520 2896 aaKnown RBP13.36□□□□□ -0.27
CUX1-213ENST00000549414 CA7P43166 264 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 ERVK11-1P61568 191 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 KLRD1Q13241 179 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 PRR31Q5SQ13 230 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 NEU4Q8WWR8 484 aaPredicted RBP13.36□□□□□ -0.27
CUX1-213ENST00000549414 C11orf44Q8N8P7 122 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 GSX1Q9H4S2 264 aaPredicted RBP13.36□□□□□ -0.27
CUX1-213ENST00000549414 C21orf62Q9NYP8 219 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 FOXI3A8MTJ6 420 aaPredicted RBP13.35□□□□□ -0.27
CUX1-213ENST00000549414 RNF224P0DH78 156 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 IGHV1-8P0DP01 117 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 RNF151Q2KHN1 245 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 GOLT1BQ9Y3E0 138 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 FAM215AQ9Y5M1 114 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 ZNF738Q8NE65 137 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 KLF17Q5JT82 389 aaPredicted RBP13.35□□□□□ -0.27
CUX1-213ENST00000549414 OR4B1Q8NGF8 309 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 HTTP42858 3142 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 MKI67P46013 3256 aaKnown RBP13.35□□□□□ -0.27
CUX1-213ENST00000549414 SORL1Q92673 2214 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 TRAV30A0A087WSZ9 112 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 HOXA5P20719 270 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 ARPC1AQ92747 370 aa13.35□□□□□ -0.27
CUX1-213ENST00000549414 USP9YO00507 2555 aaPredicted RBP13.34□□□□□ -0.27
CUX1-213ENST00000549414 IGHV2-26A0A0B4J1V2 119 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 TCAPO15273 167 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 NBR2O15453 112 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 RELQ04864 619 aaPredicted RBP13.34□□□□□ -0.27
CUX1-213ENST00000549414 YAE1D1Q9NRH1 226 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 CBLN4Q9NTU7 201 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 C2CD3Q4AC94 2353 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 C5orf42Q9H799 3197 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 SSC4DQ8WTU2 575 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 OR2T8A6NH00 312 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 WNT2P09544 360 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 STAG3L2P0CL84 134 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 STAG3L3P0CL85 134 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 MED12LQ86YW9 2145 aa13.34□□□□□ -0.27
CUX1-213ENST00000549414 TRAV1-1A0A0B4J248 108 aa13.33□□□□□ -0.27
CUX1-213ENST00000549414 COL8A2P25067 703 aa13.33□□□□□ -0.27
CUX1-213ENST00000549414 LMO1P25800 156 aa13.33□□□□□ -0.27
CUX1-213ENST00000549414 DDTP30046 118 aa13.33□□□□□ -0.27
CUX1-213ENST00000549414 TMEM116Q8NCL8 245 aa13.33□□□□□ -0.27
CUX1-213ENST00000549414 BET1LQ9NYM9 111 aa13.33□□□□□ -0.27
CUX1-213ENST00000549414 LINC00527Q9UJ94 153 aa13.33□□□□□ -0.27
CUX1-213ENST00000549414 PTPRSQ13332 1948 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 E7EQL1 145 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 GCGP01275 180 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 DUX5Q96PT3 197 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 USP9XQ93008 2570 aaPredicted RBP13.33□□□□□ -0.28
CUX1-213ENST00000549414 K7ENP7 123 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 IGKV3-20P01619 116 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 CKS2P33552 79 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 PIP4P1Q86T03 277 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 Q9H3A6 140 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 THBDP07204 575 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 FAM19A2Q8N3H0 131 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 TEX45Q8NA69 505 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 AGMATQ9BSE5 352 aa13.33□□□□□ -0.28
CUX1-213ENST00000549414 TCRBV4S1A1TA0A5B7 111 aa13.32□□□□□ -0.28
CUX1-213ENST00000549414 RBPMS2Q6ZRY4 209 aaKnown RBP13.32□□□□□ -0.28
CUX1-213ENST00000549414 IL15RAQ13261 267 aa13.32□□□□□ -0.28
CUX1-213ENST00000549414 TMEM131Q92545 1883 aa13.32□□□□□ -0.28
CUX1-213ENST00000549414 IGHV3-11P01762 117 aa13.32□□□□□ -0.28
CUX1-213ENST00000549414 TRGV3P03979 118 aa13.32□□□□□ -0.28
CUX1-213ENST00000549414 SSBP4Q9BWG4 385 aaPredicted RBP13.32□□□□□ -0.28
CUX1-213ENST00000549414 GSN-AS1Q9NRJ2 163 aa13.32□□□□□ -0.28
CUX1-213ENST00000549414 FAM90A9PA6NNJ1 464 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 H0YJW9 148 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 MMP23AO75900 390 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 BRCA2P51587 3418 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 LEPROTL1O95214 131 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 NPPCP23582 126 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 ATP5G2Q06055 141 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 TEX38Q6PEX7 206 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 CLEC19AQ6UXS0 136 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 SLC25A48Q6ZT89 311 aaKnown RBP13.31□□□□□ -0.28
CUX1-213ENST00000549414 TCF24Q7RTU0 167 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.31□□□□□ -0.28
CUX1-213ENST00000549414 TM4SF20Q53R12 229 aa13.31□□□□□ -0.28
CUX1-213ENST00000549414 PRSS8Q16651 343 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 ZNF257Q9Y2Q1 563 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 LINC00587B1AMM8 73 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 HLA-DRB1P01911 266 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 ZNF134P52741 427 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 NUP37Q8NFH4 326 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 ARHGAP21Q5T5U3 1957 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 HIGD1CA8MV81 97 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 TCF15Q12870 199 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 FAM90A2PQ658T7 463 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 LINC01551Q86U37 167 aa13.3□□□□□ -0.28
CUX1-213ENST00000549414 A0A1W2PRX2 142 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 HSPB8Q9UJY1 196 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 CBY3A6NI87 242 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 AREGP15514 252 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms