RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 CTSGP08311 255 aa10.53□□□□□ -0.72
CD44-224ENST00000526669 OR10J1P30954 320 aa10.53□□□□□ -0.72
CD44-224ENST00000526669 NUP62P37198 522 aaPredicted RBP10.53□□□□□ -0.72
CD44-224ENST00000526669 MYCNOSP40205 109 aa10.53□□□□□ -0.72
CD44-224ENST00000526669 AP2S1P53680 142 aaPredicted RBP10.53□□□□□ -0.72
CD44-224ENST00000526669 ZNF546Q86UE3 836 aa10.53□□□□□ -0.72
CD44-224ENST00000526669 OR11H4Q8NGC9 324 aa10.53□□□□□ -0.72
CD44-224ENST00000526669 OR5C1Q8NGR4 320 aa10.53□□□□□ -0.72
CD44-224ENST00000526669 CACNG8Q8WXS5 425 aa10.53□□□□□ -0.72
CD44-224ENST00000526669 IGKV1D-37A0A075B6S9 117 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 RNF222A6NCQ9 220 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 ZFP92A6NM28 416 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 NUPL2O15504 423 aaKnown RBP10.52□□□□□ -0.73
CD44-224ENST00000526669 ARPC5O15511 151 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 IGLC1P0CG04 106 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 FCGR2BP31994 310 aaPredicted RBP10.52□□□□□ -0.73
CD44-224ENST00000526669 SYNJ2BPP57105 145 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 HBG1P69891 147 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 HBG2P69892 147 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 BAXQ07812 192 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 FHL3Q13643 280 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 FAM209BQ5JX69 171 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 SPSB3Q6PJ21 355 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 TCTE3Q8IZS6 198 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 TMEM116Q8NCL8 245 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 DLX4Q92988 240 aaPredicted RBP10.52□□□□□ -0.73
CD44-224ENST00000526669 TMEM147Q9BVK8 224 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 GAR1Q9NY12 217 aaKnown RBP10.52□□□□□ -0.73
CD44-224ENST00000526669 TNFSF18Q9UNG2 199 aa10.52□□□□□ -0.73
CD44-224ENST00000526669 IGKV1OR2-108A0A075B7D4 117 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 IGKV1-17P01599 117 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 ZP3P21754 424 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 S100A11P31949 105 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 OR2F1Q13607 317 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 TREML4Q6UXN2 200 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 THAP8Q8NA92 274 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 INO80EQ8NBZ0 244 aaPredicted RBP10.51□□□□□ -0.73
CD44-224ENST00000526669 ZNF414Q96IQ9 312 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 WFDC1Q9HC57 220 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 UQCC1Q9NVA1 299 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 FBXL17Q9UF56 701 aa10.51□□□□□ -0.73
CD44-224ENST00000526669 SORL1Q92673 2214 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 TRAV30A0A087WSZ9 112 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 ZNF207O43670 478 aaKnown RBP10.5□□□□□ -0.73
CD44-224ENST00000526669 SCAF4O95104 1147 aaKnown RBP10.5□□□□□ -0.73
CD44-224ENST00000526669 EDN2P20800 178 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 GATA2P23769 480 aaPredicted RBP10.5□□□□□ -0.73
CD44-224ENST00000526669 ZNF90Q03938 601 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 TMEM144Q7Z5S9 345 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 LINC00482Q8N8I6 264 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 RCC1LQ96I51 464 aaKnown RBP10.5□□□□□ -0.73
CD44-224ENST00000526669 AQP10Q96PS8 301 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 ATP6V0BQ99437 205 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 NEURL2Q9BR09 285 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 NPVFQ9HCQ7 196 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 PKD1L1Q8TDX9 2849 aa10.5□□□□□ -0.73
CD44-224ENST00000526669 DNHD1Q96M86 4753 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 ZNF320A2RRD8 509 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 SCGB2A1O75556 95 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 YIF1AO95070 293 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 FGF7P21781 194 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 EIF2B2P49770 351 aaKnown RBP10.49□□□□□ -0.73
CD44-224ENST00000526669 RELQ04864 619 aaPredicted RBP10.49□□□□□ -0.73
CD44-224ENST00000526669 ATP6V1FQ16864 119 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 UNQ9165/PRO28630Q6UXU0 137 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 ZNF600Q6ZNG1 722 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 TRGV9Q99603 122 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 ATP5SQ99766 215 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 C20orf24Q9BUV8 137 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 GGACTQ9BVM4 153 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 MFFQ9GZY8 342 aa10.49□□□□□ -0.73
CD44-224ENST00000526669 PUS1Q9Y606 427 aaKnown RBP eCLIP10.49□□□□□ -0.73
CD44-224ENST00000526669 FNDC10F2Z333 226 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 NDUFA4O00483 81 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 OVOL1O14753 267 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 C1QBP02746 253 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 CD33P20138 364 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 KLF5Q13887 457 aaPredicted RBP10.48□□□□□ -0.73
CD44-224ENST00000526669 VWC2Q2TAL6 325 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 FAM106AQ4KMX7 169 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 TEPPQ6URK8 271 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 BTNL8Q6UX41 500 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 TOMM20LQ6UXN7 152 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 TMEM182Q6ZP80 229 aaPredicted RBP10.48□□□□□ -0.73
CD44-224ENST00000526669 CYP2G1PQ6ZSU1 146 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 GPHB5Q86YW7 130 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 C1QL4Q86Z23 238 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 MGST2Q99735 147 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 SELENOKQ9Y6D0 94 aa10.48□□□□□ -0.73
CD44-224ENST00000526669 HMSDA8MTL9 139 aa10.47□□□□□ -0.73
CD44-224ENST00000526669 AGPAT2O15120 278 aa10.47□□□□□ -0.73
CD44-224ENST00000526669 TOMM40O96008 361 aa10.47□□□□□ -0.73
CD44-224ENST00000526669 PSG1P11464 419 aa10.47□□□□□ -0.73
CD44-224ENST00000526669 CXCL2P19875 107 aa10.47□□□□□ -0.73
CD44-224ENST00000526669 YPEL3P61236 119 aaPredicted RBP10.47□□□□□ -0.73
CD44-224ENST00000526669 LYZP61626 148 aa10.47□□□□□ -0.73
CD44-224ENST00000526669 TM4SF20Q53R12 229 aa10.47□□□□□ -0.73
CD44-224ENST00000526669 TMEM190Q8WZ59 177 aa10.47□□□□□ -0.73
CD44-224ENST00000526669 ZFAND3Q9H8U3 227 aa10.47□□□□□ -0.73
CD44-224ENST00000526669 WDR83OSQ9Y284 106 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms