RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 CCR6P51684 374 aa16.1■□□□□ 0.17
LIME1-203ENST00000465591 RND2P52198 227 aa16.1■□□□□ 0.17
LIME1-203ENST00000465591 TNFRSF9Q07011 255 aa16.1■□□□□ 0.17
LIME1-203ENST00000465591 SMCO1Q147U7 214 aa16.1■□□□□ 0.17
LIME1-203ENST00000465591 LGI3Q8N145 548 aa16.1■□□□□ 0.17
LIME1-203ENST00000465591 HSPB7Q9UBY9 170 aa16.1■□□□□ 0.17
LIME1-203ENST00000465591 NPY1RP25929 384 aa16.09■□□□□ 0.17
LIME1-203ENST00000465591 RNASEH2CQ8TDP1 164 aaKnown RBP16.09■□□□□ 0.17
LIME1-203ENST00000465591 RBKSQ9H477 322 aa16.09■□□□□ 0.17
LIME1-203ENST00000465591 MAP6D1Q9H9H5 199 aa16.09■□□□□ 0.17
LIME1-203ENST00000465591 AGRNO00468 2067 aa16.08■□□□□ 0.16
LIME1-203ENST00000465591 RPS10-NUDT3A0A1W2PQS6 291 aa16.08■□□□□ 0.16
LIME1-203ENST00000465591 ANXA3P12429 323 aa16.08■□□□□ 0.16
LIME1-203ENST00000465591 RBMS2Q15434 407 aaKnown RBP16.08■□□□□ 0.16
LIME1-203ENST00000465591 DEFB135Q30KP9 77 aa16.08■□□□□ 0.16
LIME1-203ENST00000465591 TMEM128Q5BJH2 165 aa16.08■□□□□ 0.16
LIME1-203ENST00000465591 WFDC3Q8IUB2 231 aa16.08■□□□□ 0.16
LIME1-203ENST00000465591 FAM24BQ8N5W8 94 aa16.08■□□□□ 0.16
LIME1-203ENST00000465591 MS4A6AQ9H2W1 248 aa16.08■□□□□ 0.16
LIME1-203ENST00000465591 CRYBB3P26998 211 aa16.07■□□□□ 0.16
LIME1-203ENST00000465591 APOC4P55056 127 aa16.07■□□□□ 0.16
LIME1-203ENST00000465591 SRPXP78539 464 aa16.07■□□□□ 0.16
LIME1-203ENST00000465591 DTD1Q8TEA8 209 aa16.07■□□□□ 0.16
LIME1-203ENST00000465591 TRAV30A0A087WSZ9 112 aa16.06■□□□□ 0.16
LIME1-203ENST00000465591 LYRM1O43325 122 aa16.06■□□□□ 0.16
LIME1-203ENST00000465591 PITX3O75364 302 aa16.06■□□□□ 0.16
LIME1-203ENST00000465591 SLC25A4P12235 298 aa16.06■□□□□ 0.16
LIME1-203ENST00000465591 NPPCP23582 126 aa16.06■□□□□ 0.16
LIME1-203ENST00000465591 VAMP1P23763 118 aa16.06■□□□□ 0.16
LIME1-203ENST00000465591 PPP1R1AQ13522 171 aa16.06■□□□□ 0.16
LIME1-203ENST00000465591 Q6ZWC4 215 aa16.06■□□□□ 0.16
LIME1-203ENST00000465591 DNAH1Q9P2D7 4330 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 KIR2DL5BA0A0G2JN68 375 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 KIR2DL5BA0A0G2JPC4 375 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 PLA2G10O15496 165 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 UPK1BO75841 260 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 NDUFB6O95139 128 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 IFNA10P01566 189 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 OR10J1P30954 320 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 BMI1P35226 326 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 MZT2BQ6NZ67 158 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 KIR2DL5AQ8N109 375 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 LRTM2Q8N967 370 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 OR1S2Q8NGQ3 325 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 OR1S1Q8NH92 325 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 KIR2DL5BQ8NHK3 375 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 NPIPB3Q92617 1050 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 METTL26Q96S19 204 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 CACFD1Q9UGQ2 172 aa16.05■□□□□ 0.16
LIME1-203ENST00000465591 LCE6AA0A183 80 aa16.04■□□□□ 0.16
LIME1-203ENST00000465591 SPRY2O43597 315 aa16.04■□□□□ 0.16
LIME1-203ENST00000465591 SFT2D2O95562 160 aa16.04■□□□□ 0.16
LIME1-203ENST00000465591 P2RY1P47900 373 aa16.04■□□□□ 0.16
LIME1-203ENST00000465591 EWSR1Q01844 656 aaKnown RBP eCLIP16.04■□□□□ 0.16
LIME1-203ENST00000465591 STPG3Q8N7X2 389 aa16.04■□□□□ 0.16
LIME1-203ENST00000465591 ACY3Q96HD9 319 aa16.04■□□□□ 0.16
LIME1-203ENST00000465591 TP53TG1Q9Y2A0 90 aa16.04■□□□□ 0.16
LIME1-203ENST00000465591 U3KQ87 197 aa16.04■□□□□ 0.16
LIME1-203ENST00000465591 U3KQE9 123 aa16.04■□□□□ 0.16
LIME1-203ENST00000465591 PLECQ15149 4684 aaKnown RBP16.03■□□□□ 0.16
LIME1-203ENST00000465591 DUXBA0A1W2PPF3 345 aa16.03■□□□□ 0.16
LIME1-203ENST00000465591 UBE2CO00762 179 aa16.03■□□□□ 0.16
LIME1-203ENST00000465591 CD5P06127 495 aa16.03■□□□□ 0.16
LIME1-203ENST00000465591 YPEL3P61236 119 aaPredicted RBP16.03■□□□□ 0.16
LIME1-203ENST00000465591 RPL11P62913 178 aaKnown RBP16.03■□□□□ 0.16
LIME1-203ENST00000465591 PAFAH1B2P68402 229 aa16.03■□□□□ 0.16
LIME1-203ENST00000465591 USF2Q15853 346 aaPredicted RBP16.03■□□□□ 0.16
LIME1-203ENST00000465591 CENPSQ8N2Z9 138 aa16.03■□□□□ 0.16
LIME1-203ENST00000465591 RNF183Q96D59 192 aa16.03■□□□□ 0.16
LIME1-203ENST00000465591 TMEM231Q9H6L2 316 aa16.03■□□□□ 0.16
LIME1-203ENST00000465591 PIGBOS1A0A0B4J2F0 54 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 A0A0J9YWU9 116 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 A0A1W2PS18 150 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 DNASE2O00115 360 aaPredicted RBP16.02■□□□□ 0.16
LIME1-203ENST00000465591 SCGB2A1O75556 95 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 CMC4P56277 68 aaPredicted RBP16.02■□□□□ 0.16
LIME1-203ENST00000465591 DEFB131AP59861 70 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 LEMD1Q68G75 181 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 ETFRF1Q6IPR1 90 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 NOXA1Q86UR1 476 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 Q8WTZ3 238 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 RABAC1Q9UI14 185 aa16.02■□□□□ 0.16
LIME1-203ENST00000465591 TRAV2A0A0B4J234 112 aa16.01■□□□□ 0.15
LIME1-203ENST00000465591 IAPPP10997 89 aa16.01■□□□□ 0.15
LIME1-203ENST00000465591 BTCP35070 178 aa16.01■□□□□ 0.15
LIME1-203ENST00000465591 UBE2MP61081 183 aaKnown RBP16.01■□□□□ 0.15
LIME1-203ENST00000465591 ASAH1Q13510 395 aa16.01■□□□□ 0.15
LIME1-203ENST00000465591 STXBP6Q8NFX7 210 aa16.01■□□□□ 0.15
LIME1-203ENST00000465591 FAM240BA0A1B0GVZ2 78 aa16■□□□□ 0.15
LIME1-203ENST00000465591 K7EQG2 157 aa16■□□□□ 0.15
LIME1-203ENST00000465591 IFNA4P05014 189 aa16■□□□□ 0.15
LIME1-203ENST00000465591 IL4P05112 153 aa16■□□□□ 0.15
LIME1-203ENST00000465591 LYG2Q86SG7 212 aa16■□□□□ 0.15
LIME1-203ENST00000465591 IL17DQ8TAD2 202 aa16■□□□□ 0.15
LIME1-203ENST00000465591 FLVCR2Q9UPI3 526 aa16■□□□□ 0.15
LIME1-203ENST00000465591 TOMM40O96008 361 aa15.99■□□□□ 0.15
LIME1-203ENST00000465591 HNRNPCP07910 306 aaKnown RBP eCLIP15.99■□□□□ 0.15
LIME1-203ENST00000465591 HOXB5P09067 269 aa15.99■□□□□ 0.15
LIME1-203ENST00000465591 SLC25A6P12236 298 aa15.99■□□□□ 0.15
LIME1-203ENST00000465591 DEFA1P59665 94 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms