RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 OR1S2Q8NGQ3 325 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 NPIPB3Q92617 1050 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 C7orf50Q9BRJ6 194 aaKnown RBP9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 RETNQ9HD89 108 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 SCGB2A1O75556 95 aa9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 DFFBO76075 338 aa9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 IFNA4P05014 189 aa9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 OR4E1P0C645 316 aa9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 ANXA7P20073 488 aaKnown RBP9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 OR10J1P30954 320 aa9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 TFPI2P48307 235 aa9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 ATP5IP56385 69 aaPredicted RBP9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 ODF3L2Q3SX64 289 aa9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 GBGT1Q8N5D6 347 aa9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 ACY3Q96HD9 319 aa9.47□□□□□ -0.89
PRPF40A-203ENST00000448428 TENM3Q9P273 2699 aa9.46□□□□□ -0.89
PRPF40A-203ENST00000448428 LOC102724200A0A096LPH7 203 aaPredicted RBP9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 A6NHS1 94 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 FAM90A26D6RGX4 464 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 C3orf84H3BNL1 204 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 ADAP1O75689 374 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 CD5P06127 495 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 IAPPP10997 89 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 CRYBB3P26998 211 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 BMI1P35226 326 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 YPEL3P61236 119 aaPredicted RBP9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 DHRS2Q13268 280 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 LYG2Q86SG7 212 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 MUC7Q8TAX7 377 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 Q8WTZ3 238 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 METTL26Q96S19 204 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 FAM110AQ9BQ89 295 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 GGTLC1Q9BX51 225 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 MAGT1Q9H0U3 335 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 EDA2RQ9HAV5 297 aa9.46□□□□□ -0.9
PRPF40A-203ENST00000448428 HUWE1Q7Z6Z7 4374 aaKnown RBP9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 A0A1W2PS18 150 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 MPTX1A8MV57 137 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 LYRM1O43325 122 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 SYNGR2O43760 224 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 MED6O75586 246 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 GPX4P36969 197 aaPredicted RBP9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 RPL11P62913 178 aaKnown RBP9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 CNPY1Q3B7I2 92 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 C4orf46Q504U0 113 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 WFDC3Q8IUB2 231 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 COQ8AQ8NI60 647 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 MS4A6AQ9H2W1 248 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 TMEM231Q9H6L2 316 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 U3KQE9 123 aa9.45□□□□□ -0.9
PRPF40A-203ENST00000448428 WRBO00258 174 aa9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 RD3LP0DJH9 198 aa9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 CMC4P56277 68 aaPredicted RBP9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 RAB11AP62491 216 aa9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 PAFAH1B2P68402 229 aa9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 ID3Q02535 119 aa9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 GAMTQ14353 236 aa9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 ZNF124Q15973 351 aa9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 LINC00299Q6ZSB3 139 aa9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 APRG1Q8IVJ8 170 aa9.44□□□□□ -0.9
PRPF40A-203ENST00000448428 DNASE2O00115 360 aaPredicted RBP9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 TOMM40O96008 361 aa9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 TCRBP04435 133 aa9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 PSG1P11464 419 aa9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 P2RY1P47900 373 aa9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 CIB3Q96Q77 187 aaPredicted RBP9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 CCDC32Q9BV29 185 aa9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 C20orf85Q9H1P6 137 aa9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 MAP6D1Q9H9H5 199 aa9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 PAIP2BQ9ULR5 123 aaKnown RBP9.43□□□□□ -0.9
PRPF40A-203ENST00000448428 IGKV1D-37A0A075B6S9 117 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 IFNA21P01568 189 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 IL4P05112 153 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 HNRNPCP07910 306 aaKnown RBP eCLIP9.42□□□□□ -0.94e-6■■■□□ 18.4
PRPF40A-203ENST00000448428 LYL1P12980 280 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 RPL35AP18077 110 aaKnown RBP9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 APOC4P55056 127 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 POLR2GP62487 172 aaKnown RBP eCLIP9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 RPP30P78346 268 aaKnown RBP9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 ZNF90Q03938 601 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 USF2Q15853 346 aaPredicted RBP9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 CASC10Q5T4H9 136 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 C16orf54Q6UWD8 224 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 FAM24BQ8N5W8 94 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 OR4D5Q8NGN0 318 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 MITD1Q8WV92 249 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 S100ZQ8WXG8 99 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 GRAMD2BQ96HH9 432 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 NARS2Q96I59 477 aaKnown RBP9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 SLC35E1Q96K37 410 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 OVOL2Q9BRP0 275 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 STAB2Q8WWQ8 2551 aa9.42□□□□□ -0.9
PRPF40A-203ENST00000448428 TRAV6A0A075B6T7 132 aa9.41□□□□□ -0.9
PRPF40A-203ENST00000448428 TRAV2A0A0B4J234 112 aa9.41□□□□□ -0.9
PRPF40A-203ENST00000448428 ZFP92A6NM28 416 aa9.41□□□□□ -0.9
PRPF40A-203ENST00000448428 PRSS46E5RG02 174 aa9.41□□□□□ -0.9
PRPF40A-203ENST00000448428 NKX2-1P43699 371 aaPredicted RBP9.41□□□□□ -0.9
PRPF40A-203ENST00000448428 SPANXN5Q5MJ07 72 aa9.41□□□□□ -0.9
PRPF40A-203ENST00000448428 STXBP6Q8NFX7 210 aa9.41□□□□□ -0.9
PRPF40A-203ENST00000448428 OR51G1Q8NGK1 321 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms