RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 KCNIP2Q9NS61 270 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 IGLC1P0CG04 106 aa14.52□□□□□ -0.09
CLN3-206ENST00000360019 C15orf32Q32M92 178 aa14.52□□□□□ -0.09
CLN3-206ENST00000360019 DPPA3Q6W0C5 159 aa14.52□□□□□ -0.09
CLN3-206ENST00000360019 SSX7Q7RTT5 188 aa14.52□□□□□ -0.09
CLN3-206ENST00000360019 SLC39A9Q9NUM3 307 aa14.52□□□□□ -0.09
CLN3-206ENST00000360019 INAFM1C9JVW0 142 aa14.51□□□□□ -0.09
CLN3-206ENST00000360019 CLN5O75503 358 aa14.51□□□□□ -0.09
CLN3-206ENST00000360019 IGHV3-23P01764 117 aa14.51□□□□□ -0.09
CLN3-206ENST00000360019 MBP02144 154 aa14.51□□□□□ -0.09
CLN3-206ENST00000360019 M6PRP20645 277 aa14.51□□□□□ -0.09
CLN3-206ENST00000360019 NECAP1Q8NC96 275 aa14.51□□□□□ -0.09
CLN3-206ENST00000360019 TRGV9Q99603 122 aa14.51□□□□□ -0.09
CLN3-206ENST00000360019 HRH4Q9H3N8 390 aa14.51□□□□□ -0.09
CLN3-206ENST00000360019 C21orf62Q9NYP8 219 aa14.51□□□□□ -0.09
CLN3-206ENST00000360019 EIF3GO75821 320 aaKnown RBP eCLIP14.5□□□□□ -0.09
CLN3-206ENST00000360019 OR10G4Q8NGN3 311 aa14.5□□□□□ -0.09
CLN3-206ENST00000360019 OR10G9Q8NGN4 311 aa14.5□□□□□ -0.09
CLN3-206ENST00000360019 OR10G7Q8NGN6 311 aa14.5□□□□□ -0.09
CLN3-206ENST00000360019 LYPD6BQ8NI32 183 aa14.5□□□□□ -0.09
CLN3-206ENST00000360019 VN1R17PQ8TDU5 208 aa14.5□□□□□ -0.09
CLN3-206ENST00000360019 RCC1LQ96I51 464 aaKnown RBP14.5□□□□□ -0.09
CLN3-206ENST00000360019 F8P00451 2351 aa14.5□□□□□ -0.09
CLN3-206ENST00000360019 MFAP4P55083 255 aa14.5□□□□□ -0.09
CLN3-206ENST00000360019 ACOT6Q3I5F7 207 aaPredicted RBP14.5□□□□□ -0.09
CLN3-206ENST00000360019 Q8N2B8 174 aa14.5□□□□□ -0.09
CLN3-206ENST00000360019 FN1P02751 2386 aaKnown RBP14.5□□□□□ -0.09
CLN3-206ENST00000360019 FAM181BA6NEQ2 426 aa14.49□□□□□ -0.09
CLN3-206ENST00000360019 CLDN34H7C241 214 aa14.49□□□□□ -0.09
CLN3-206ENST00000360019 BRI3O95415 125 aa14.49□□□□□ -0.09
CLN3-206ENST00000360019 IGKV1-17P01599 117 aa14.49□□□□□ -0.09
CLN3-206ENST00000360019 IGLV1-40P01703 118 aa14.49□□□□□ -0.09
CLN3-206ENST00000360019 NPBWR1P48145 328 aa14.49□□□□□ -0.09
CLN3-206ENST00000360019 MED9Q9NWA0 146 aa14.49□□□□□ -0.09
CLN3-206ENST00000360019 H3BUA1 57 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 H2AFB1P0C5Y9 115 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 TIGITQ495A1 244 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 FAM122CQ6P4D5 195 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 COMMD7Q86VX2 200 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 ZNF502Q8TBZ5 544 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 SLC25A22Q9H936 323 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 A0A1B0GV50 99 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 TRGV3P03979 118 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 FCGR2BP31994 310 aaPredicted RBP14.48□□□□□ -0.09
CLN3-206ENST00000360019 SELENOTP62341 195 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 Q56UQ5 140 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 SPSB3Q6PJ21 355 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 ZNF329Q86UD4 541 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 KLK15Q9H2R5 256 aa14.48□□□□□ -0.09
CLN3-206ENST00000360019 PSMB11A5LHX3 300 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 FAM223BA6NKX1 122 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 GNG7O60262 68 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 HILS1P60008 231 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 C10orf99Q6UWK7 81 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 FAM223AQ8IWN6 122 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 ZNF418Q8TF45 676 aaPredicted RBP14.47□□□□□ -0.09
CLN3-206ENST00000360019 SFT2D1Q8WV19 159 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 MBD3L1Q8WWY6 194 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 CCDC140Q96MF4 163 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 PFDN2Q9UHV9 154 aa14.47□□□□□ -0.09
CLN3-206ENST00000360019 OR2T8A6NH00 312 aa14.46□□□□□ -0.09
CLN3-206ENST00000360019 SEC14L6B5MCN3 397 aa14.46□□□□□ -0.09
CLN3-206ENST00000360019 PF4V1P10720 104 aa14.46□□□□□ -0.09
CLN3-206ENST00000360019 TPPP2P59282 170 aa14.46□□□□□ -0.09
CLN3-206ENST00000360019 LCN15Q6UWW0 184 aa14.46□□□□□ -0.09
CLN3-206ENST00000360019 LCNL1Q6ZST4 164 aa14.46□□□□□ -0.09
CLN3-206ENST00000360019 RAB24Q969Q5 203 aa14.46□□□□□ -0.09
CLN3-206ENST00000360019 TXN2Q99757 166 aa14.46□□□□□ -0.09
CLN3-206ENST00000360019 SEPSECSQ9HD40 501 aaKnown RBP14.46□□□□□ -0.09
CLN3-206ENST00000360019 SERTAD4Q9NUC0 356 aa14.46□□□□□ -0.09
CLN3-206ENST00000360019 CTXND1A0A1B0GTU2 59 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 HMGB3O15347 200 aaKnown RBP14.45□□□□□ -0.1
CLN3-206ENST00000360019 IGHG4P01861 327 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 RNASE1P07998 156 aaKnown RBP14.45□□□□□ -0.1
CLN3-206ENST00000360019 PSG1P11464 419 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 CDC34P49427 236 aaPredicted RBP14.45□□□□□ -0.1
CLN3-206ENST00000360019 CCL20P78556 96 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 ATP5G2Q06055 141 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 TMEM37Q8WXS4 190 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 ACTR3CQ9C0K3 210 aaPredicted RBP14.45□□□□□ -0.1
CLN3-206ENST00000360019 TRAV30A0A087WSZ9 112 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 ATP6V1G1O75348 118 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 CTSGP08311 255 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 PSMB8P28062 276 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 SPATA31B1PQ5VZV4 182 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 Q6ZSV7 163 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 EEF1AKMT3Q96AZ1 226 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 DOK5Q9P104 306 aa14.45□□□□□ -0.1
CLN3-206ENST00000360019 MAP1LC3B2A6NCE7 125 aa14.44□□□□□ -0.1
CLN3-206ENST00000360019 GPR183P32249 361 aa14.44□□□□□ -0.1
CLN3-206ENST00000360019 RAB9AP51151 201 aa14.44□□□□□ -0.1
CLN3-206ENST00000360019 FGF8P55075 233 aaPredicted RBP14.44□□□□□ -0.1
CLN3-206ENST00000360019 CHRDL1Q9BU40 450 aa14.44□□□□□ -0.1
CLN3-206ENST00000360019 MAP1LC3BQ9GZQ8 125 aa14.44□□□□□ -0.1
CLN3-206ENST00000360019 TRBV7-1A0A0A6YYK4 115 aa14.43□□□□□ -0.1
CLN3-206ENST00000360019 TRAV1-1A0A0B4J248 108 aa14.43□□□□□ -0.1
CLN3-206ENST00000360019 CLEC3BP05452 202 aa14.43□□□□□ -0.1
CLN3-206ENST00000360019 RD3LP0DJH9 198 aa14.43□□□□□ -0.1
CLN3-206ENST00000360019 ADMP35318 185 aa14.43□□□□□ -0.1
CLN3-206ENST00000360019 PATE2Q6UY27 113 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms