RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 RPP21Q9H633 154 aaKnown RBP12.91□□□□□ -0.34
PTPRF-201ENST00000359947 SIPA1L1O43166 1804 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 COL8A2P25067 703 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 SLC25A34Q6PIV7 304 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 LINC00114Q6XXX2 140 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 ZNF600Q6ZNG1 722 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 MSRB2Q9Y3D2 182 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 C10orf55Q5SWW7 151 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 PIP4P2Q8N4L2 257 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 USF3Q68DE3 2245 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 IGHV3-64A0A075B6Q5 118 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 TMEM178BH3BS89 294 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 PMCHL1Q16048 86 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 EFNB1P98172 346 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 ZNF506Q5JVG8 444 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 CACNG8Q8WXS5 425 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 RNASE7Q9H1E1 156 aaKnown RBP12.91□□□□□ -0.34
PTPRF-201ENST00000359947 ZNF319Q9P2F9 582 aa12.91□□□□□ -0.34
PTPRF-201ENST00000359947 SHISA3A0PJX4 238 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 ZNF688P0C7X2 276 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 Q5PR19 223 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 ERASQ7Z444 233 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 ZNF98A6NK75 572 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 KLF17Q5JT82 389 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-201ENST00000359947 MRPL16Q9NX20 251 aaKnown RBP12.9□□□□□ -0.34
PTPRF-201ENST00000359947 LINC01356Q8N9X3 169 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 GGACTQ9BVM4 153 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 FABP5P3A8MUU1 101 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 DTX2Q86UW9 622 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 VCX2Q9H322 139 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 ATP5LO75964 103 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 UCP1P25874 307 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 ST20Q9HBF5 79 aa12.9□□□□□ -0.34
PTPRF-201ENST00000359947 TRAV12-3A0A0B4J271 114 aa12.9□□□□□ -0.35
PTPRF-201ENST00000359947 HIGD1CA8MV81 97 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 FBLIM1Q8WUP2 373 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 ST6GALNAC6Q969X2 333 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.89□□□□□ -0.353e-7■■■□□ 16.6
PTPRF-201ENST00000359947 TRBV6-7A0A0A0MS04 114 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 IGHV1-8P0DP01 117 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 PSMG3Q9BT73 122 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-201ENST00000359947 MST1P26927 711 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 RUSC1-AS1Q66K80 236 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 LTBP1Q14766 1721 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 A0A087WX48 190 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 ADARB2-AS1A8MUL3 147 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 APOMO95445 188 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 IL18BPO95998 194 aa12.89□□□□□ -0.35
PTPRF-201ENST00000359947 TRGV1A0A0A0MS02 117 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 IGKV1-9A0A0C4DH69 117 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 TMEM183AQ8IXX5 376 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 OTORQ9NRC9 128 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 TRAV21A0A0B4J279 112 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 SSBP4Q9BWG4 385 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-201ENST00000359947 UQCR10Q9UDW1 63 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 A0A0G2JMZ2 1700 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 LRRC37A2A6NM11 1700 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 ZNF324BQ6AW86 544 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-201ENST00000359947 IGKV2-40A0A087WW87 121 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-201ENST00000359947 IGKV2D-40P01614 121 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-201ENST00000359947 SLC50A1Q9BRV3 221 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 PVRIGQ6DKI7 326 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 CIARTQ8N365 385 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-201ENST00000359947 NUDT10Q8NFP7 164 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 FAM110DQ8TAY7 271 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-201ENST00000359947 SLC25A15Q9Y619 301 aa12.88□□□□□ -0.35
PTPRF-201ENST00000359947 IGHV1-3A0A0C4DH29 117 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 EFNA2O43921 213 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 FAM89BQ8N5H3 189 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 DOCK11Q5JSL3 2073 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 IFI27P40305 119 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-201ENST00000359947 FAM19A2Q8N3H0 131 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 RBMY1BA6NDE4 496 aaKnown RBP12.87□□□□□ -0.35
PTPRF-201ENST00000359947 RBMY1EA6NEQ0 496 aaKnown RBP12.87□□□□□ -0.35
PTPRF-201ENST00000359947 NPIPB5A8MRT5 1133 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 RBMY1DP0C7P1 496 aaKnown RBP12.87□□□□□ -0.35
PTPRF-201ENST00000359947 RBMY1A1P0DJD3 496 aaKnown RBP12.87□□□□□ -0.35
PTPRF-201ENST00000359947 RBMY1CP0DJD4 496 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 TPTE2P1Q5T6R2 138 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 NXT2Q9NPJ8 142 aaKnown RBP12.87□□□□□ -0.35
PTPRF-201ENST00000359947 COL4A6Q14031 1691 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 PKDREJQ9NTG1 2253 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 CXorf65A6NEN9 183 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 RCHY1Q96PM5 261 aa12.87□□□□□ -0.35
PTPRF-201ENST00000359947 PCNX1Q96RV3 2341 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 CRIPAKQ8N1N5 446 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 SEPSECSQ9HD40 501 aaKnown RBP12.86□□□□□ -0.35
PTPRF-201ENST00000359947 FCN3O75636 299 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 DUTP33316 252 aaKnown RBP12.86□□□□□ -0.35
PTPRF-201ENST00000359947 SPTAN1Q13813 2472 aaKnown RBP12.86□□□□□ -0.35
PTPRF-201ENST00000359947 TRAV5A0A0B4J249 113 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-201ENST00000359947 J3QKU1 62 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 SFTA2Q6UW10 78 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 LYPD2Q6UXB3 125 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 TMEM144Q7Z5S9 345 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 ASCL2Q99929 193 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 PRR31Q5SQ13 230 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 ORMDL3Q8N138 153 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 MBNL3Q9NUK0 354 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms