RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 HIF1ANQ9NWT6 349 aa11.8□□□□□ -0.52
CCDC47-201ENST00000225726 FAM208BQ5VWN6 2430 aa11.8□□□□□ -0.52
CCDC47-201ENST00000225726 KIAA0141Q14154 515 aaPredicted RBP11.8□□□□□ -0.52
CCDC47-201ENST00000225726 SLC25A33Q9BSK2 321 aa11.8□□□□□ -0.52
CCDC47-201ENST00000225726 TMPRSS5Q9H3S3 457 aa11.8□□□□□ -0.52
CCDC47-201ENST00000225726 DMRT1Q9Y5R6 373 aa11.8□□□□□ -0.52
CCDC47-201ENST00000225726 DDTP30046 118 aa11.8□□□□□ -0.52
CCDC47-201ENST00000225726 RND2P52198 227 aa11.8□□□□□ -0.52
CCDC47-201ENST00000225726 SLC35E3Q7Z769 313 aa11.8□□□□□ -0.52
CCDC47-201ENST00000225726 C19orf24Q9BVV8 132 aa11.8□□□□□ -0.52
CCDC47-201ENST00000225726 NAV3Q8IVL0 2385 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 TCRBV4S1A1TA0A5B7 111 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 HLA-DRB1P01911 266 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 STAG3L2P0CL84 134 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 STAG3L3P0CL85 134 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 PSMB3P49720 205 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 MEGF9Q9H1U4 602 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 MRPL36Q9P0J6 103 aaKnown RBP11.79□□□□□ -0.52
CCDC47-201ENST00000225726 IGKV1D-37A0A075B6S9 117 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 C5orf52A6NGY3 159 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 NPIPB5A8MRT5 1133 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 LOXL1Q08397 574 aaPredicted RBP11.79□□□□□ -0.52
CCDC47-201ENST00000225726 SOHLH1Q5JUK2 328 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 LRRK2Q5S007 2527 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 TMEM116Q8NCL8 245 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 RASL11BQ9BPW5 248 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 MT-CO2P00403 227 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 IGHV4-38-2P0DP08 117 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 FABP4P15090 132 aa11.79□□□□□ -0.52
CCDC47-201ENST00000225726 FAM103A1Q9BTL3 118 aaKnown RBP11.79□□□□□ -0.52
CCDC47-201ENST00000225726 CXorf1O96002 111 aa11.78□□□□□ -0.52
CCDC47-201ENST00000225726 IGHV3-48P01763 117 aa11.78□□□□□ -0.52
CCDC47-201ENST00000225726 SELENOTP62341 195 aa11.78□□□□□ -0.52
CCDC47-201ENST00000225726 DMRTA1Q5VZB9 504 aa11.78□□□□□ -0.52
CCDC47-201ENST00000225726 BRD3OSQ6XYD6 125 aa11.78□□□□□ -0.52
CCDC47-201ENST00000225726 MED13LQ71F56 2210 aa11.78□□□□□ -0.52
CCDC47-201ENST00000225726 GATA2P23769 480 aaPredicted RBP11.78□□□□□ -0.52
CCDC47-201ENST00000225726 NDPQ00604 133 aa11.78□□□□□ -0.52
CCDC47-201ENST00000225726 CYB561D1Q8N8Q1 229 aa11.78□□□□□ -0.52
CCDC47-201ENST00000225726 TRGV9Q99603 122 aa11.78□□□□□ -0.52
CCDC47-201ENST00000225726 IGHV7-81A0A0B4J1V7 117 aa11.77□□□□□ -0.52
CCDC47-201ENST00000225726 A0A0U1RQK1 487 aa11.77□□□□□ -0.52
CCDC47-201ENST00000225726 I3L2K1 104 aa11.77□□□□□ -0.52
CCDC47-201ENST00000225726 EREGO14944 169 aa11.77□□□□□ -0.52
CCDC47-201ENST00000225726 ASPHD1Q5U4P2 390 aa11.77□□□□□ -0.52
CCDC47-201ENST00000225726 GPR61Q9BZJ8 451 aa11.77□□□□□ -0.52
CCDC47-201ENST00000225726 SEPSECSQ9HD40 501 aaKnown RBP11.77□□□□□ -0.52
CCDC47-201ENST00000225726 FUT9Q9Y231 359 aa11.77□□□□□ -0.52
CCDC47-201ENST00000225726 TSTD3H0UI37 97 aa11.77□□□□□ -0.53
CCDC47-201ENST00000225726 NPSP0C0P6 89 aa11.77□□□□□ -0.53
CCDC47-201ENST00000225726 Q5PR19 223 aa11.77□□□□□ -0.53
CCDC47-201ENST00000225726 TTC9CQ8N5M4 171 aa11.77□□□□□ -0.53
CCDC47-201ENST00000225726 MBD6Q96DN6 1003 aa11.77□□□□□ -0.53
CCDC47-201ENST00000225726 OR5G3P0C626 314 aa11.77□□□□□ -0.53
CCDC47-201ENST00000225726 ARL14EPLP0DKL9 152 aa11.77□□□□□ -0.53
CCDC47-201ENST00000225726 SPATA31B1PQ5VZV4 182 aa11.77□□□□□ -0.53
CCDC47-201ENST00000225726 RNF2Q99496 336 aa11.77□□□□□ -0.53
CCDC47-201ENST00000225726 J3QLI3 93 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 MEF2BQ02080 365 aaPredicted RBP11.76□□□□□ -0.53
CCDC47-201ENST00000225726 HIST1H2BAQ96A08 127 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 TNFRSF19Q9NS68 423 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 FAM78BQ5VT40 261 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 SPNS3Q6ZMD2 512 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 PSMG3-AS1Q96PY0 264 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 FBN2P35556 2912 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 IGHV3-21A0A0B4J1V1 117 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 ZNF90Q03938 601 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 OR1L4Q8NGR5 311 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 GATAD1Q8WUU5 269 aa11.76□□□□□ -0.53
CCDC47-201ENST00000225726 MRPL32Q9BYC8 188 aaKnown RBP11.76□□□□□ -0.53
CCDC47-201ENST00000225726 PSMB11A5LHX3 300 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 EGR2P11161 476 aaPredicted RBP11.75□□□□□ -0.53
CCDC47-201ENST00000225726 ZNF674Q2M3X9 581 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 KLF17Q5JT82 389 aaPredicted RBP11.75□□□□□ -0.53
CCDC47-201ENST00000225726 S100A7AQ86SG5 101 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 OR4X1Q8NH49 305 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 CBY3A6NI87 242 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 COLCA2A8K830 154 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 RNF223E7ERA6 249 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 PAGE4O60829 102 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 CD81P60033 236 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 MIR17HGQ75NE6 70 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 PIFOQ8TCI5 191 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 TCEAL7Q9BRU2 100 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 MOB4Q9Y3A3 225 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 SPG11Q96JI7 2443 aa11.75□□□□□ -0.53
CCDC47-201ENST00000225726 K7EIM0 57 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 GCHFRP30047 84 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 C5orf56Q8N8D9 126 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 HSPB9Q9BQS6 159 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 ELOVL1Q9BW60 279 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 TECRQ9NZ01 308 aaKnown RBP11.74□□□□□ -0.53
CCDC47-201ENST00000225726 AVPP01185 164 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 FAM90A2PQ658T7 463 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 DNAJC4Q9NNZ3 241 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 IGLV11-55A0A075B6I3 123 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 COX7A2P2O60397 106 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 TAS2R45P59539 299 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 PRSS57Q6UWY2 283 aa11.74□□□□□ -0.53
CCDC47-201ENST00000225726 TMEM37Q8WXS4 190 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 225.6 ms