RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SMIM24O75264 130 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 NDUFB2O95178 105 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 FSTL3O95633 263 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 CDS2O95674 445 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 PRM2P04554 102 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 BPGMP07738 259 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 TFPTP0C1Z6 253 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 NPPCP23582 126 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 SRP14P37108 136 aaKnown RBP1.24□□□□□ -2.21
CD44-239ENST00000639002 CD200P41217 278 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 AKR1C3P42330 323 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 GABRA2P47869 451 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 NDUFA6P56556 154 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 FXYD7P58549 80 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 DEFA3P59666 94 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 CKS1BP61024 79 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 YPEL3P61236 119 aaPredicted RBP1.24□□□□□ -2.21
CD44-239ENST00000639002 RPS28P62857 69 aaKnown RBP1.24□□□□□ -2.21
CD44-239ENST00000639002 PSPHP78330 225 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 CCL20P78556 96 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 HTR4Q13639 388 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 WHAMMP3Q1A5X7 153 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 SMIM21Q3B7S5 101 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 KRTAP21-3Q3LHN1 58 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 LDLRAD2Q5SZI1 272 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 ZNF660Q6AZW8 331 aaPredicted RBP1.24□□□□□ -2.21
CD44-239ENST00000639002 AMMECR1LQ6DCA0 310 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 RPL13AP3Q6NVV1 102 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 AGTRAPQ6RW13 159 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 SSX8Q7RTT4 187 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 TMEM86AQ8N2M4 240 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 C10orf126Q8N4M7 172 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 C3orf22Q8N5N4 141 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 DAND5Q8N907 189 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 OR11G2Q8NGC1 345 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 OR4D11Q8NGI4 311 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 OR13C4Q8NGS5 318 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 SGMS2Q8NHU3 365 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 FNDC9Q8TBE3 224 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 CD200R1Q8TD46 325 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 MAL2Q969L2 176 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 B9D2Q9BPU9 175 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 VPS25Q9BRG1 176 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 DOHHQ9BU89 302 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 OR2D2Q9H210 308 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 SLC39A9Q9NUM3 307 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 JPT1Q9UK76 154 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 CYSLTR1Q9Y271 337 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 ASB4Q9Y574 426 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 NUBP2Q9Y5Y2 271 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 ICOSQ9Y6W8 199 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 ZNF638Q14966 1978 aaKnown RBP1.24□□□□□ -2.21
CD44-239ENST00000639002 CHD5Q8TDI0 1954 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 PLXNB3Q9ULL4 1909 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 LTBP2Q14767 1821 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 CAMSAP2Q08AD1 1489 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 SOGA1O94964 1423 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 ABCC12Q96J65 1359 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 A0A087WUU8 490 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 IGKV1-12A0A0C4DH73 117 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 IRGMA1A4Y4 181 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 TMEM189A5PLL7 270 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 GGT3PA6NGU5 568 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 RFPL4AA6NLU0 287 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 RFPL4AL1F8VTS6 287 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 TRAPPC2LH3BP13 241 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 J3QR89 54 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 TXNDC9O14530 226 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 UBFD1O14562 309 aaKnown RBP1.23□□□□□ -2.21
CD44-239ENST00000639002 CREBL2O60519 120 aaPredicted RBP1.23□□□□□ -2.21
CD44-239ENST00000639002 GGCTO75223 188 aaKnown RBP1.23□□□□□ -2.21
CD44-239ENST00000639002 IGKV1D-12P01611 117 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 TRGV3P03979 118 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 CSN2P05814 226 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 IGHV3-30-3P0DP02 117 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 BCL2P10415 239 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 CMPK1P30085 196 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 LPAR6P43657 344 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 TSPEAR-AS2P59090 65 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 TAS2R30P59541 319 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 EIF5AP63241 154 aaKnown RBP1.23□□□□□ -2.21
CD44-239ENST00000639002 PLCXD2Q0VAA5 305 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 OR8G1Q15617 311 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 ZNF141Q15928 474 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 MRPL51Q4U2R6 128 aaKnown RBP1.23□□□□□ -2.21
CD44-239ENST00000639002 SPANXN3Q5MJ09 141 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 C10orf91Q5T1B1 145 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 RASL11AQ6T310 242 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 Q6ZQT7 251 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 Q6ZS52 159 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 GPHB5Q86YW7 130 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 OR8I2Q8N0Y5 310 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 ST6GALNAC3Q8NDV1 305 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 OR10D4PQ8NGN7 298 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 PPTC7Q8NI37 304 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 RPS4Y2Q8TD47 263 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 LMX1AQ8TE12 382 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 THEM6Q8WUY1 208 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 C1orf54Q8WWF1 131 aa1.23□□□□□ -2.21
CD44-239ENST00000639002 H1FXQ92522 213 aaKnown RBP1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms