RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PRAF2O60831 178 aa13.6□□□□□ -0.23
CLN3-247ENST00000636351 KLF5Q13887 457 aaPredicted RBP13.6□□□□□ -0.23
CLN3-247ENST00000636351 BSXQ3C1V8 233 aa13.6□□□□□ -0.23
CLN3-247ENST00000636351 C2orf83Q53S99 150 aa13.6□□□□□ -0.23
CLN3-247ENST00000636351 NOXA1Q86UR1 476 aa13.6□□□□□ -0.23
CLN3-247ENST00000636351 OR9G4Q8NGQ1 327 aa13.6□□□□□ -0.23
CLN3-247ENST00000636351 BSCL2Q96G97 398 aaPredicted RBP13.6□□□□□ -0.23
CLN3-247ENST00000636351 OR4C12Q96R67 309 aa13.6□□□□□ -0.23
CLN3-247ENST00000636351 GAR1Q9NY12 217 aaKnown RBP13.6□□□□□ -0.23
CLN3-247ENST00000636351 GSKIPQ9P0R6 139 aa13.6□□□□□ -0.23
CLN3-247ENST00000636351 IGHV3-35A0A0C4DH35 117 aa13.59□□□□□ -0.23
CLN3-247ENST00000636351 SYNGR2O43760 224 aa13.59□□□□□ -0.23
CLN3-247ENST00000636351 SPNP16150 400 aa13.59□□□□□ -0.23
CLN3-247ENST00000636351 NKX2-1P43699 371 aaPredicted RBP13.59□□□□□ -0.23
CLN3-247ENST00000636351 CIB3Q96Q77 187 aaPredicted RBP13.59□□□□□ -0.23
CLN3-247ENST00000636351 ASCL2Q99929 193 aa13.59□□□□□ -0.23
CLN3-247ENST00000636351 PEMTQ9UBM1 199 aa13.59□□□□□ -0.23
CLN3-247ENST00000636351 U3KQ87 197 aa13.59□□□□□ -0.23
CLN3-247ENST00000636351 STAB2Q8WWQ8 2551 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 ZNF320A2RRD8 509 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 NUPL2O15504 423 aaKnown RBP13.58□□□□□ -0.24
CLN3-247ENST00000636351 SSSCA1O60232 199 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 GNG7O60262 68 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 PTTG1O95997 202 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 IFNA4P05014 189 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 NPBWR1P48145 328 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 FAM106AQ4KMX7 169 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 SPSB3Q6PJ21 355 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 ZBTB8BQ8NAP8 495 aaPredicted RBP13.58□□□□□ -0.24
CLN3-247ENST00000636351 OR4D5Q8NGN0 318 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 RNASEH2CQ8TDP1 164 aaKnown RBP13.58□□□□□ -0.24
CLN3-247ENST00000636351 OR10C1Q96KK4 312 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 ATP6V0BQ99437 205 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 MARVELD1Q9BSK0 173 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 PALMDQ9NP74 551 aa13.58□□□□□ -0.24
CLN3-247ENST00000636351 INSL3P51460 131 aa13.57□□□□□ -0.24
CLN3-247ENST00000636351 POLR2GP62487 172 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLN3-247ENST00000636351 RPP30P78346 268 aaKnown RBP13.57□□□□□ -0.24
CLN3-247ENST00000636351 PVRIGQ6DKI7 326 aa13.57□□□□□ -0.24
CLN3-247ENST00000636351 TXN2Q99757 166 aa13.57□□□□□ -0.24
CLN3-247ENST00000636351 FNDC4Q9H6D8 234 aaPredicted RBP13.57□□□□□ -0.24
CLN3-247ENST00000636351 SNRPGP15A8MWD9 76 aa13.56□□□□□ -0.24
CLN3-247ENST00000636351 F8W735 103 aaPredicted RBP13.56□□□□□ -0.24
CLN3-247ENST00000636351 SCGB2A1O75556 95 aa13.56□□□□□ -0.24
CLN3-247ENST00000636351 RAB11AP62491 216 aa13.56□□□□□ -0.24
CLN3-247ENST00000636351 GSG1LQ6UXU4 331 aa13.56□□□□□ -0.24
CLN3-247ENST00000636351 GPHB5Q86YW7 130 aa13.56□□□□□ -0.24
CLN3-247ENST00000636351 TMEM170AQ8WVE7 144 aa13.56□□□□□ -0.24
CLN3-247ENST00000636351 CHRDL1Q9BU40 450 aa13.56□□□□□ -0.24
CLN3-247ENST00000636351 H3BP45 60 aa13.55□□□□□ -0.24
CLN3-247ENST00000636351 GOSR2O14653 212 aa13.55□□□□□ -0.24
CLN3-247ENST00000636351 FCGR2BP31994 310 aaPredicted RBP13.55□□□□□ -0.24
CLN3-247ENST00000636351 RELQ04864 619 aaPredicted RBP13.55□□□□□ -0.24
CLN3-247ENST00000636351 SPANXN5Q5MJ07 72 aa13.55□□□□□ -0.24
CLN3-247ENST00000636351 ETFRF1Q6IPR1 90 aa13.55□□□□□ -0.24
CLN3-247ENST00000636351 HAPLN4Q86UW8 402 aa13.55□□□□□ -0.24
CLN3-247ENST00000636351 ZNF256Q9Y2P7 627 aaPredicted RBP13.55□□□□□ -0.24
CLN3-247ENST00000636351 C15orf62A8K5M9 175 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 C3orf84H3BNL1 204 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 SSNA1O43805 119 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 LY86O95711 162 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 SLC25A4P12235 298 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 ATP5IP56385 69 aaPredicted RBP13.54□□□□□ -0.24
CLN3-247ENST00000636351 ID3Q02535 119 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 MLANAQ16655 118 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 SLC16A13Q7RTY0 426 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 DYNLRB2Q8TF09 96 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 ACY3Q96HD9 319 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 C2orf50Q96LR7 162 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 C20orf24Q9BUV8 137 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 PSENENQ9NZ42 101 aa13.54□□□□□ -0.24
CLN3-247ENST00000636351 STRAPQ9Y3F4 350 aaKnown RBP13.54□□□□□ -0.24
CLN3-247ENST00000636351 LGALS9O00182 355 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 YIF1AO95070 293 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 CSN3P07498 182 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 CTSGP08311 255 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 ADMP35318 185 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 RND2P52198 227 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 S100A10P60903 97 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 UNQ9165/PRO28630Q6UXU0 137 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 OR4X1Q8NH49 305 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 ZNF436Q9C0F3 470 aaPredicted RBP13.53□□□□□ -0.24
CLN3-247ENST00000636351 MRPL36Q9P0J6 103 aaKnown RBP13.53□□□□□ -0.24
CLN3-247ENST00000636351 UFC1Q9Y3C8 167 aa13.53□□□□□ -0.24
CLN3-247ENST00000636351 LSM5Q9Y4Y9 91 aaKnown RBP13.53□□□□□ -0.24
CLN3-247ENST00000636351 IGHV3OR16-8A0A075B7F1 116 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 C2orf70A6NJV1 201 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 L7N2F9 121 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 NDUFA4O00483 81 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 CLN5O75503 358 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 MBPP02686 304 aaPredicted RBP13.52□□□□□ -0.25
CLN3-247ENST00000636351 VAMP2P63027 116 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 RGS21Q2M5E4 152 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 IL34Q6ZMJ4 242 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 TMEM190Q8WZ59 177 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 SLC35E1Q96K37 410 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 RAB40CQ96S21 281 aa13.52□□□□□ -0.25
CLN3-247ENST00000636351 RCL1Q9Y2P8 373 aaKnown RBP13.52□□□□□ -0.25
CLN3-247ENST00000636351 HUWE1Q7Z6Z7 4374 aaKnown RBP13.52□□□□□ -0.25
CLN3-247ENST00000636351 DYNC2H1Q8NCM8 4307 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms