RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 FAM223BA6NKX1 122 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 C17orf112F2Z3M2 114 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 SCGB2A1O75556 95 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 TRGV3P03979 118 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 RHOGP84095 191 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 CFHR3Q02985 330 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 GAMTQ14353 236 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 TEPPQ6URK8 271 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 BTNL8Q6UX41 500 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 Q6ZSV7 163 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 TMEM144Q7Z5S9 345 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 PRIMA1Q86XR5 153 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 FAM223AQ8IWN6 122 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 ZNF709Q8N972 641 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 HSD17B11Q8NBQ5 300 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 VN1R17PQ8TDU5 208 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 TAF15Q92804 592 aaKnown RBP eCLIP12.09□□□□□ -0.47
UPF1-206ENST00000598471 PHYHIPLQ96FC7 376 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 CXorf58Q96LI9 332 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 GINS3Q9BRX5 216 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 ARV1Q9H2C2 271 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 KCNIP2Q9NS61 270 aa12.09□□□□□ -0.47
UPF1-206ENST00000598471 TRBV9A0A0B4J1U6 114 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 IGHV3-21A0A0B4J1V1 117 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 K7EIM0 57 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 SOX15O60248 233 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 NDUFB8O95169 186 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 IFNA7P01567 189 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 IGLV1-40P01703 118 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 PF4V1P10720 104 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 NPBWR1P48145 328 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 RND2P52198 227 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 MFAP4P55083 255 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 TPPP2P59282 170 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 TREML4Q6UXN2 200 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 MS4A10Q96PG2 267 aa12.08□□□□□ -0.48
UPF1-206ENST00000598471 NSD1Q96L73 2696 aaPredicted RBP12.07□□□□□ -0.48
UPF1-206ENST00000598471 NDUFA7O95182 113 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 IGHG4P01861 327 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 ATP6V0CP27449 155 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 ATP5G2Q06055 141 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 MLANAQ16655 118 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 C15orf32Q32M92 178 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 TEX38Q6PEX7 206 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 CENPVQ7Z7K6 275 aaPredicted RBP12.07□□□□□ -0.48
UPF1-206ENST00000598471 COMMD1Q8N668 190 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 TMEM116Q8NCL8 245 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 OR4X1Q8NH49 305 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 SCARB1Q8WTV0 552 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 NPIPB3Q92617 1050 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 EEF1AKMT3Q96AZ1 226 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 USMG5Q96IX5 58 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 C16orf95Q9H693 158 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 GAR1Q9NY12 217 aaKnown RBP12.07□□□□□ -0.48
UPF1-206ENST00000598471 C21orf62Q9NYP8 219 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 TIMM9Q9Y5J7 89 aa12.07□□□□□ -0.48
UPF1-206ENST00000598471 A0A0G2JLM5 398 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 ZFP92A6NM28 416 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 IGHV3-48P01763 117 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 FABP1P07148 127 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 ELANEP08246 267 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 SEC11BP0C7V7 166 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 MDKP21741 143 aaPredicted RBP12.06□□□□□ -0.48
UPF1-206ENST00000598471 CAMLGP49069 296 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 RIPPLY3P57055 190 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 FOXE3Q13461 319 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 TEX261Q6UWH6 196 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 TXN2Q99757 166 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 PSMG3Q9BT73 122 aaPredicted RBP12.06□□□□□ -0.48
UPF1-206ENST00000598471 NPCDR1Q9BY65 106 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 SERTAD4Q9NUC0 356 aa12.06□□□□□ -0.48
UPF1-206ENST00000598471 LSM4Q9Y4Z0 139 aaKnown RBP12.06□□□□□ -0.48
UPF1-206ENST00000598471 TRAV30A0A087WSZ9 112 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 TRBV7-1A0A0A6YYK4 115 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 MFSD2BA6NFX1 497 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 GNG7O60262 68 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 CLN5O75503 358 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 SPP1P10451 314 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 RUNX1Q01196 453 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 Q56UQ5 140 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 ZNF329Q86UD4 541 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 THAP8Q8NA92 274 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 OR2G3Q8NGZ4 309 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 OR4F5Q8NH21 305 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 TMED6Q8WW62 240 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 ATP6V0BQ99437 205 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 SLC25A32Q9H2D1 315 aa12.05□□□□□ -0.48
UPF1-206ENST00000598471 AGPAT2O15120 278 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 PSMB8P28062 276 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 OR10J1P30954 320 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 FCGR2BP31994 310 aaPredicted RBP12.04□□□□□ -0.48
UPF1-206ENST00000598471 RAB9AP51151 201 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 SELENOTP62341 195 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 DEFA5Q01523 94 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 FAM209BQ5JX69 171 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 ALKAL2Q6UX46 152 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 ZNF767PQ75MW2 155 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 ZNF680Q8NEM1 530 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 TRGV9Q99603 122 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 MGST2Q99735 147 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 145.3 ms