RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 LILRB2Q8N423 598 aa15.4■□□□□ 0.06
VPS53-216ENST00000574029 FBXL17Q9UF56 701 aa15.4■□□□□ 0.06
VPS53-216ENST00000574029 TRAV2A0A0B4J234 112 aa15.39■□□□□ 0.05
VPS53-216ENST00000574029 DFFBO76075 338 aa15.39■□□□□ 0.05
VPS53-216ENST00000574029 RAB3DO95716 219 aa15.39■□□□□ 0.05
VPS53-216ENST00000574029 CA1P00915 261 aaPredicted RBP15.39■□□□□ 0.05
VPS53-216ENST00000574029 APOHP02749 345 aaPredicted RBP15.39■□□□□ 0.05
VPS53-216ENST00000574029 S100A5P33763 92 aa15.39■□□□□ 0.05
VPS53-216ENST00000574029 STEAP1BQ6NZ63 245 aa15.39■□□□□ 0.05
VPS53-216ENST00000574029 CCDC190Q86UF4 302 aa15.39■□□□□ 0.05
VPS53-216ENST00000574029 MRGPRFQ96AM1 343 aa15.39■□□□□ 0.05
VPS53-216ENST00000574029 MS4A6AQ9H2W1 248 aa15.39■□□□□ 0.05
VPS53-216ENST00000574029 ZFAND3Q9H8U3 227 aa15.39■□□□□ 0.05
VPS53-216ENST00000574029 ST8SIA3O43173 380 aa15.38■□□□□ 0.05
VPS53-216ENST00000574029 TCTAP57738 103 aa15.38■□□□□ 0.05
VPS53-216ENST00000574029 TMEM187Q14656 261 aa15.38■□□□□ 0.05
VPS53-216ENST00000574029 MEF2DQ14814 521 aa15.38■□□□□ 0.05
VPS53-216ENST00000574029 DUSP18Q8NEJ0 188 aa15.38■□□□□ 0.05
VPS53-216ENST00000574029 OR4D10Q8NGI6 311 aa15.38■□□□□ 0.05
VPS53-216ENST00000574029 TERB2Q8NHR7 220 aa15.38■□□□□ 0.05
VPS53-216ENST00000574029 C2CD4CQ8TF44 421 aa15.38■□□□□ 0.05
VPS53-216ENST00000574029 NPBWR1P48145 328 aa15.37■□□□□ 0.05
VPS53-216ENST00000574029 DEFB131AP59861 70 aa15.37■□□□□ 0.05
VPS53-216ENST00000574029 PRR20EP86478 221 aa15.37■□□□□ 0.05
VPS53-216ENST00000574029 PRR20CP86479 221 aa15.37■□□□□ 0.05
VPS53-216ENST00000574029 PRR20DP86480 221 aa15.37■□□□□ 0.05
VPS53-216ENST00000574029 PRR20BP86481 221 aa15.37■□□□□ 0.05
VPS53-216ENST00000574029 PRR20AP86496 221 aa15.37■□□□□ 0.05
VPS53-216ENST00000574029 ZNF600Q6ZNG1 722 aa15.37■□□□□ 0.05
VPS53-216ENST00000574029 ZNF486Q96H40 463 aaPredicted RBP15.37■□□□□ 0.05
VPS53-216ENST00000574029 PUS1Q9Y606 427 aaKnown RBP eCLIP15.37■□□□□ 0.05
VPS53-216ENST00000574029 V9GYH0 126 aa15.37■□□□□ 0.05
VPS53-216ENST00000574029 ANKRD20A5PA0PJZ0 165 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 INS-IGF2F8WCM5 200 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 DNASE2O00115 360 aaPredicted RBP15.36■□□□□ 0.05
VPS53-216ENST00000574029 DEFB4AO15263 64 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 TMEM50AO95807 157 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 AKAIN1P0CW23 69 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 ETV6P41212 452 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 LEMD1Q68G75 181 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 PVRIGQ6DKI7 326 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 FAM24BQ8N5W8 94 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 DNAH10Q8IVF4 4471 aa15.36■□□□□ 0.05
VPS53-216ENST00000574029 IGHV3-66A0A0C4DH42 116 aa15.35■□□□□ 0.05
VPS53-216ENST00000574029 A0A1B0GU03 582 aa15.35■□□□□ 0.05
VPS53-216ENST00000574029 RND3P61587 244 aa15.35■□□□□ 0.05
VPS53-216ENST00000574029 IZUMO4Q1ZYL8 232 aa15.35■□□□□ 0.05
VPS53-216ENST00000574029 SPINK9Q5DT21 86 aa15.35■□□□□ 0.05
VPS53-216ENST00000574029 P0C879 139 aa15.34■□□□□ 0.05
VPS53-216ENST00000574029 SNCAP37840 140 aa15.34■□□□□ 0.05
VPS53-216ENST00000574029 RPL11P62913 178 aaKnown RBP15.34■□□□□ 0.05
VPS53-216ENST00000574029 ZNF79Q15937 498 aa15.34■□□□□ 0.05
VPS53-216ENST00000574029 Q8NAQ8 132 aa15.34■□□□□ 0.05
VPS53-216ENST00000574029 TMEM231Q9H6L2 316 aa15.34■□□□□ 0.05
VPS53-216ENST00000574029 APLNQ9ULZ1 77 aa15.34■□□□□ 0.05
VPS53-216ENST00000574029 DISC1C4P0D8 188 aa15.33■□□□□ 0.04
VPS53-216ENST00000574029 IGKV1-5P01602 117 aa15.33■□□□□ 0.04
VPS53-216ENST00000574029 PYDC2Q56P42 97 aa15.33■□□□□ 0.04
VPS53-216ENST00000574029 STHQ8IWL8 128 aa15.33■□□□□ 0.04
VPS53-216ENST00000574029 OR4C16Q8NGL9 310 aa15.33■□□□□ 0.04
VPS53-216ENST00000574029 ZFAND1Q8TCF1 268 aa15.33■□□□□ 0.04
VPS53-216ENST00000574029 HRH4Q9H3N8 390 aa15.33■□□□□ 0.04
VPS53-216ENST00000574029 A0A0B4J293 547 aa15.32■□□□□ 0.04
VPS53-216ENST00000574029 C11orf94C9JXX5 98 aa15.32■□□□□ 0.04
VPS53-216ENST00000574029 CORTO00230 105 aa15.32■□□□□ 0.04
VPS53-216ENST00000574029 GIG44P09565 113 aaPredicted RBP15.32■□□□□ 0.04
VPS53-216ENST00000574029 PGAM2P15259 253 aa15.32■□□□□ 0.04
VPS53-216ENST00000574029 NPPCP23582 126 aa15.32■□□□□ 0.04
VPS53-216ENST00000574029 SURF2Q15527 256 aaPredicted RBP15.32■□□□□ 0.04
VPS53-216ENST00000574029 SCGB2B2Q4G0G5 96 aa15.32■□□□□ 0.04
VPS53-216ENST00000574029 SPANXN2Q5MJ10 180 aa15.32■□□□□ 0.04
VPS53-216ENST00000574029 TRPT1Q86TN4 253 aaKnown RBP15.32■□□□□ 0.04
VPS53-216ENST00000574029 SLC35G3Q8N808 338 aa15.32■□□□□ 0.04
VPS53-216ENST00000574029 RABAC1Q9UI14 185 aa15.32■□□□□ 0.04
VPS53-216ENST00000574029 A0A1W2PS18 150 aa15.31■□□□□ 0.04
VPS53-216ENST00000574029 K7EQG2 157 aa15.31■□□□□ 0.04
VPS53-216ENST00000574029 RNASE2P10153 161 aaKnown RBP15.31■□□□□ 0.04
VPS53-216ENST00000574029 TMEM41BQ5BJD5 291 aa15.31■□□□□ 0.04
VPS53-216ENST00000574029 FAAP20Q6NZ36 180 aa15.31■□□□□ 0.04
VPS53-216ENST00000574029 TRIM63Q969Q1 353 aa15.31■□□□□ 0.04
VPS53-216ENST00000574029 GRAMD2BQ96HH9 432 aa15.31■□□□□ 0.04
VPS53-216ENST00000574029 TP53RKQ96S44 253 aa15.31■□□□□ 0.04
VPS53-216ENST00000574029 PRRT1Q99946 306 aa15.31■□□□□ 0.04
VPS53-216ENST00000574029 MRPL36Q9P0J6 103 aaKnown RBP15.31■□□□□ 0.04
VPS53-216ENST00000574029 VPS13DQ5THJ4 4388 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 A6NHS1 94 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 IGLL5B9A064 214 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 CLN5O75503 358 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 HERC2O95714 4834 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 IFNA17P01571 189 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 RBMY1A1P0DJD3 496 aaKnown RBP15.3■□□□□ 0.04
VPS53-216ENST00000574029 RBMY1CP0DJD4 496 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 CRYBB3P26998 211 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 SUB1P53999 127 aaKnown RBP eCLIP15.3■□□□□ 0.04
VPS53-216ENST00000574029 PIGPP57054 158 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 RBMY1FQ15415 496 aaKnown RBP15.3■□□□□ 0.04
VPS53-216ENST00000574029 OR13C8Q8NGS7 320 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 MARCH1Q8TCQ1 289 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 DEDD2Q8WXF8 326 aa15.3■□□□□ 0.04
VPS53-216ENST00000574029 FNDC4Q9H6D8 234 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms