RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 SULT1A4P0DMN0 295 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 MSNP26038 577 aaKnown RBP1.59□□□□□ -2.15
SCFD1-221ENST00000556534 PSMB8P28062 276 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 MAGEA12P43365 314 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 SERPINB9P50453 376 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 ZNF80P51504 273 aaPredicted RBP1.59□□□□□ -2.15
SCFD1-221ENST00000556534 HIST1H4AP62805 103 aaKnown RBP1.59□□□□□ -2.15
SCFD1-221ENST00000556534 IBA57Q5T440 356 aaKnown RBP1.59□□□□□ -2.15
SCFD1-221ENST00000556534 FAM27BQ5VT28 67 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 LYG2Q86SG7 212 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 MCFD2Q8NI22 146 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 SLC7A6Q92536 515 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 NDUFB11Q9NX14 153 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 OPTCQ9UBM4 332 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 RTL1A6NKG5 1358 aa1.59□□□□□ -2.16
SCFD1-221ENST00000556534 SOGA1O94964 1423 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 DENND4CQ5VZ89 1909 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 POLA1P09884 1462 aaPredicted RBP1.58□□□□□ -2.16
SCFD1-221ENST00000556534 RAPGEF2Q9Y4G8 1499 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 COL5A3P25940 1745 aaPredicted RBP1.58□□□□□ -2.16
SCFD1-221ENST00000556534 ARHGEF12Q9NZN5 1544 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 IGHV3-64A0A075B6Q5 118 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 TRAV38-1A0A0B4J264 116 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 TRAV41A0A0B4J266 112 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 IGHV1-18A0A0C4DH31 117 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 H7C2G1 150 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 OVOL1O14753 267 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 SULT1B1O43704 296 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 C8GP07360 202 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 RBP1P09455 135 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 PEBP1P30086 187 aaKnown RBP1.58□□□□□ -2.16
SCFD1-221ENST00000556534 HINT1P49773 126 aaPredicted RBP1.58□□□□□ -2.16
SCFD1-221ENST00000556534 CDC42P60953 191 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 SUPT4H1P63272 117 aaKnown RBP1.58□□□□□ -2.16
SCFD1-221ENST00000556534 SLC36A1Q7Z2H8 476 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 KRT222Q8N1A0 295 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 RPP25LQ8N5L8 163 aaKnown RBP1.58□□□□□ -2.16
SCFD1-221ENST00000556534 OR11H6Q8NGC7 330 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 OR52R1Q8NGF1 315 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 OR4X2Q8NGF9 303 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 TERB2Q8NHR7 220 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 SPACA4Q8TDM5 124 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 MRPS24Q96EL2 167 aaKnown RBP1.58□□□□□ -2.16
SCFD1-221ENST00000556534 PRRT1Q99946 306 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 HOPXQ9BPY8 73 aaPredicted RBP1.58□□□□□ -2.16
SCFD1-221ENST00000556534 CHST6Q9GZX3 395 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 VCX3BQ9H321 246 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 TIMM9Q9Y5J7 89 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 ZNF532Q9HCE3 1301 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 GBF1Q92538 1859 aa1.58□□□□□ -2.16
SCFD1-221ENST00000556534 FANCAO15360 1455 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 SETXQ7Z333 2677 aaKnown RBP1.57□□□□□ -2.16
SCFD1-221ENST00000556534 A0A0D9SEW6 157 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 IRGMA1A4Y4 181 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 C1QBP02746 253 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 CLPSP04118 112 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 RPS4Y1P22090 263 aaKnown RBP1.57□□□□□ -2.16
SCFD1-221ENST00000556534 KRR1Q13601 381 aaKnown RBP1.57□□□□□ -2.16
SCFD1-221ENST00000556534 PCOTHQ58A44 107 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 SLC25A40Q8TBP6 338 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 TIMM21Q9BVV7 248 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 TTTY12Q9BZ98 90 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 CCDC90BQ9GZT6 254 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 PIEZO1Q92508 2521 aa1.57□□□□□ -2.16
SCFD1-221ENST00000556534 TRAV4A0A0B4J268 109 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 ARRDC5A6NEK1 342 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 ZNF705FA8MVS1 300 aaPredicted RBP1.56□□□□□ -2.16
SCFD1-221ENST00000556534 E5RI56 91 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 LY6LH3BQJ8 138 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 PGLYRP1O75594 196 aaPredicted RBP1.56□□□□□ -2.16
SCFD1-221ENST00000556534 IGKV1-16P04430 117 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 SMIM17P0DL12 118 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 PPIBP23284 216 aaKnown RBP1.56□□□□□ -2.16
SCFD1-221ENST00000556534 EMP1P54849 157 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 AQP4P55087 323 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 HSPE1P61604 102 aaKnown RBP1.56□□□□□ -2.16
SCFD1-221ENST00000556534 VBP1P61758 197 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 ERHP84090 104 aaKnown RBP1.56□□□□□ -2.16
SCFD1-221ENST00000556534 RPL19P84098 196 aaKnown RBP1.56□□□□□ -2.16
SCFD1-221ENST00000556534 SPANXN3Q5MJ09 141 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 Q6Q795 121 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 Q6ZTI0 123 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 GOLT1AQ6ZVE7 132 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 PARVBQ9HBI1 364 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 UBR2Q8IWV8 1755 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 KIF24Q5T7B8 1368 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 PTPRGP23470 1445 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 FGD6Q6ZV73 1430 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 UHRF1BP1LA0JNW5 1464 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 RALGAPBQ86X10 1494 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 WDR7Q9Y4E6 1490 aa1.56□□□□□ -2.16
SCFD1-221ENST00000556534 MDC1Q14676 2089 aaKnown RBP1.55□□□□□ -2.16
SCFD1-221ENST00000556534 DNMBPQ6XZF7 1577 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 EYSQ5T1H1 3165 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 ICE1Q9Y2F5 2266 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 XIRP1Q702N8 1843 aaKnown RBP1.55□□□□□ -2.16
SCFD1-221ENST00000556534 IGLV3-9A0A075B6K5 115 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 TRBV10-2A0A0K0K1G8 114 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 TRAPPC13A5PLN9 417 aa1.55□□□□□ -2.16
SCFD1-221ENST00000556534 OR51F1A6NGY5 319 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms