RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IGHV7-4-1A0A0J9YVY3 117 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 TSPAN4O14817 238 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 NOL3O60936 208 aaKnown RBP7.91□□□□□ -1.14
CD44-227ENST00000528086 PITX3O75364 302 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 ZNF124Q15973 351 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 PYDC2Q56P42 97 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 CASC10Q5T4H9 136 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 FAM219AQ8IW50 185 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 MUC7Q8TAX7 377 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 RRNAD1Q96FB5 475 aaKnown RBP7.91□□□□□ -1.14
CD44-227ENST00000528086 TUBA4BQ9H853 241 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 PALMDQ9NP74 551 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.91□□□□□ -1.14
CD44-227ENST00000528086 UBQLN2Q9UHD9 624 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 HYDINQ4G0P3 5121 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 CCDC160A6NGH7 325 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 NUPL2O15504 423 aaKnown RBP7.9□□□□□ -1.14
CD44-227ENST00000528086 CYB5BO43169 146 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 AKR1C4P17516 323 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 BTCP35070 178 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 HOXA1P49639 335 aaPredicted RBP7.9□□□□□ -1.14
CD44-227ENST00000528086 PRSS54Q6PEW0 395 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 OR52B4Q8NGK2 314 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 ST8SIA2Q92186 375 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 IL22RA2Q969J5 263 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 RHPN1-AS1Q9BWJ2 59 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 VSIRQ9H7M9 311 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 SCP2D1Q9UJQ7 156 aa7.9□□□□□ -1.14
CD44-227ENST00000528086 A0A0B4J2A0 478 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 IGHV3-66A0A0C4DH42 116 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 CLN5O75503 358 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 ATG12O94817 140 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 IGLC1P0CG04 106 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 CCR6P51684 374 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 C2orf83Q53S99 150 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 TOMM5Q8N4H5 51 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 FAM24BQ8N5W8 94 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 TMEM116Q8NCL8 245 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 OR4X1Q8NH49 305 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 SPAG8Q99932 426 aaPredicted RBP7.89□□□□□ -1.15
CD44-227ENST00000528086 SPATA25Q9BR10 227 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 ZMAT4Q9H898 229 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 HSPB7Q9UBY9 170 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 SHPKQ9UHJ6 478 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 FLVCR2Q9UPI3 526 aa7.89□□□□□ -1.15
CD44-227ENST00000528086 PUS1Q9Y606 427 aaKnown RBP eCLIP7.89□□□□□ -1.15
CD44-227ENST00000528086 C3orf84H3BNL1 204 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 GNG7O60262 68 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 SULT1A3P0DMM9 295 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 SULT1A4P0DMN0 295 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 SNCAP37840 140 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 EWSR1Q01844 656 aaKnown RBP eCLIP7.88□□□□□ -1.15
CD44-227ENST00000528086 TNFRSF9Q07011 255 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 PPP1R1AQ13522 171 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 TIGITQ495A1 244 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 LRTM2Q8N967 370 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 DUSP18Q8NEJ0 188 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 OVOL2Q9BRP0 275 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 RBKSQ9H477 322 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 U3KQE9 123 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 ALMS1Q8TCU4 4167 aa7.88□□□□□ -1.15
CD44-227ENST00000528086 TRAV14DV4A0A0A6YYC5 116 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 PLA2G10O15496 165 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 DFFBO76075 338 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 YIF1AO95070 293 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 OPRK1P41145 380 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 HTR2BP41595 481 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 NPBWR1P48145 328 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 RELQ04864 619 aaPredicted RBP7.87□□□□□ -1.15
CD44-227ENST00000528086 SMCO1Q147U7 214 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 RBMS2Q15434 407 aaKnown RBP7.87□□□□□ -1.15
CD44-227ENST00000528086 TMEM128Q5BJH2 165 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 ZNF600Q6ZNG1 722 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 RBPMS2Q6ZRY4 209 aaKnown RBP7.87□□□□□ -1.15
CD44-227ENST00000528086 SLC16A13Q7RTY0 426 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 TMED4Q7Z7H5 227 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 APRG1Q8IVJ8 170 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 STPG3Q8N7X2 389 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 SLC24A4Q8NFF2 622 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 RNASE11Q8TAA1 199 aaKnown RBP7.87□□□□□ -1.15
CD44-227ENST00000528086 HEYLQ9NQ87 328 aaPredicted RBP7.87□□□□□ -1.15
CD44-227ENST00000528086 KCNIP3Q9Y2W7 256 aa7.87□□□□□ -1.15
CD44-227ENST00000528086 IGKV3-7A0A075B6H7 116 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 IGKV1D-37A0A075B6S9 117 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 CEBPZOSA8MTT3 80 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 MPTX1A8MV57 137 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 SFT2D2O95562 160 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 CRYBB3P26998 211 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 S100A5P33763 92 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 RND2P52198 227 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 ZFAND6Q6FIF0 208 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 TCF24Q7RTU0 167 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 LGI3Q8N145 548 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 GBGT1Q8N5D6 347 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 RNASEH2CQ8TDP1 164 aaKnown RBP7.86□□□□□ -1.15
CD44-227ENST00000528086 SCGB3A2Q96PL1 93 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 PDCD10Q9BUL8 212 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 GGTLC1Q9BX51 225 aa7.86□□□□□ -1.15
CD44-227ENST00000528086 LOC102724200A0A096LPH7 203 aaPredicted RBP7.85□□□□□ -1.15
CD44-227ENST00000528086 PRSS46E5RG02 174 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms