RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 FNDC4Q9H6D8 234 aaPredicted RBP11.96□□□□□ -0.5
NUP54-217ENST00000514987 IGLC7A0M8Q6 106 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 K7EN84 100 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 LIPFP07098 398 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 CRYBB3P26998 211 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 TAS2R60P59551 318 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 UBE2L3P68036 154 aaKnown RBP11.95□□□□□ -0.5
NUP54-217ENST00000514987 ZNF90Q03938 601 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 MRGPRG-AS1Q2M3A8 158 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 RPEL1Q2QD12 228 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 COX19Q49B96 90 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 CENPWQ5EE01 88 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 C10orf55Q5SWW7 151 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 RPEQ96AT9 228 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 TIMD4Q96H15 378 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 TRGV9Q99603 122 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 SLC25A2Q9BXI2 301 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 OSTCQ9NRP0 149 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 SIGLEC9Q9Y336 463 aa11.95□□□□□ -0.5
NUP54-217ENST00000514987 TRBV9A0A0B4J1U6 114 aa11.94□□□□□ -0.5
NUP54-217ENST00000514987 HIST1H1BP16401 226 aaKnown RBP11.94□□□□□ -0.5
NUP54-217ENST00000514987 SUMO1P63165 101 aaKnown RBP11.94□□□□□ -0.5
NUP54-217ENST00000514987 LY6G5BQ8NDX9 201 aa11.94□□□□□ -0.5
NUP54-217ENST00000514987 OR5AU1Q8NGC0 362 aa11.94□□□□□ -0.5
NUP54-217ENST00000514987 PERPQ96FX8 193 aa11.94□□□□□ -0.5
NUP54-217ENST00000514987 PAXXQ9BUH6 204 aa11.94□□□□□ -0.5
NUP54-217ENST00000514987 CFAP47Q6ZTR5 3102 aa11.94□□□□□ -0.5
NUP54-217ENST00000514987 IGKV1D-37A0A075B6S9 117 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 GGTLC3B5MD39 225 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 ERVFC1-1P60608 527 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 TNXAQ16473 311 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 PPP1R27Q86WC6 154 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 TMEM116Q8NCL8 245 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 OR5R1Q8NH85 324 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 NEU4Q8WWR8 484 aaPredicted RBP11.93□□□□□ -0.5
NUP54-217ENST00000514987 TMEM18Q96B42 140 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 TPSG1Q9NRR2 321 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 TNFRSF19Q9NS68 423 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 ZNF355PQ9NSJ1 428 aa11.93□□□□□ -0.5
NUP54-217ENST00000514987 LINC00587B1AMM8 73 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 LYNX1G3V0Z9 82 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 LY6LH3BQJ8 138 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 ISLRO14498 428 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 GCGP01275 180 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 AMBPP02760 352 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 LYNX1P0DP58 116 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 HNF1AP20823 631 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 LGALS4P56470 323 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 RITA1Q96K30 269 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 COL25A1Q9BXS0 654 aaPredicted RBP11.92□□□□□ -0.5
NUP54-217ENST00000514987 CBLN4Q9NTU7 201 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 RAXQ9Y2V3 346 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 IGHV3-72A0A0B4J1Y9 119 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 SIAH2O43255 324 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 CEACAM3P40198 252 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 JOSD1Q15040 202 aaPredicted RBP11.92□□□□□ -0.5
NUP54-217ENST00000514987 TMEM190Q8WZ59 177 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 MISP3Q96FF7 219 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 CDC42EP3Q9UKI2 254 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 F11RQ9Y624 299 aaKnown RBP11.92□□□□□ -0.5
NUP54-217ENST00000514987 V9GYV3 84 aa11.92□□□□□ -0.5
NUP54-217ENST00000514987 MGAQ8IWI9 3026 aa11.91□□□□□ -0.5
NUP54-217ENST00000514987 M0R1W7 72 aa11.91□□□□□ -0.5
NUP54-217ENST00000514987 PLP1P60201 277 aa11.91□□□□□ -0.5
NUP54-217ENST00000514987 ADORA2A-AS1P86434 159 aa11.91□□□□□ -0.5
NUP54-217ENST00000514987 PATE2Q6UY27 113 aa11.91□□□□□ -0.5
NUP54-217ENST00000514987 PCNX1Q96RV3 2341 aa11.91□□□□□ -0.5
NUP54-217ENST00000514987 TRAV5A0A0B4J249 113 aa11.9□□□□□ -0.5
NUP54-217ENST00000514987 MT-ND6P03923 174 aa11.9□□□□□ -0.5
NUP54-217ENST00000514987 REG1AP05451 166 aa11.9□□□□□ -0.5
NUP54-217ENST00000514987 COX7A1P24310 79 aa11.9□□□□□ -0.5
NUP54-217ENST00000514987 GRNP28799 593 aaKnown RBP11.9□□□□□ -0.5
NUP54-217ENST00000514987 SSBP2P81877 361 aaPredicted RBP11.9□□□□□ -0.5
NUP54-217ENST00000514987 TPTE2P1Q5T6R2 138 aa11.9□□□□□ -0.5
NUP54-217ENST00000514987 WDR73Q6P4I2 378 aa11.9□□□□□ -0.5
NUP54-217ENST00000514987 OR11H6Q8NGC7 330 aa11.9□□□□□ -0.5
NUP54-217ENST00000514987 IGF2BP2-AS1Q96M15 143 aa11.9□□□□□ -0.5
NUP54-217ENST00000514987 ONECUT1Q9UBC0 465 aa11.9□□□□□ -0.5
NUP54-217ENST00000514987 SPENQ96T58 3664 aaKnown RBP11.9□□□□□ -0.5
NUP54-217ENST00000514987 MAP1BP46821 2468 aaKnown RBP11.89□□□□□ -0.51
NUP54-217ENST00000514987 SLC17A3O00476 420 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 HYPMO75409 117 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 HTR1DP28221 377 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 HCP5Q6MZN7 132 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 LINC00305Q7Z4B0 112 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 GBGT1Q8N5D6 347 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 OR1L6Q8NGR2 347 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 FXYD5Q96DB9 178 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 SMIM12Q96EX1 92 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 CHRDL1Q9BU40 450 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 GNB1LQ9BYB4 327 aa11.89□□□□□ -0.51
NUP54-217ENST00000514987 PTPRZ1P23471 2315 aaPredicted RBP11.89□□□□□ -0.51
NUP54-217ENST00000514987 TEX22C9J3V5 150 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 C22orf46C9J442 243 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 PKIAP61925 76 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 MORN5Q5VZ52 161 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 ZNF329Q86UD4 541 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 MRPL36Q9P0J6 103 aaKnown RBP11.88□□□□□ -0.51
NUP54-217ENST00000514987 DPM3Q9P2X0 92 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 BOD1L1Q8NFC6 3051 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms