RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 TNFRSF19Q9NS68 423 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 SLC25A10Q9UBX3 287 aaPredicted RBP8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 FBXL7Q9UJT9 491 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 MTORP42345 2549 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 SERTM2A0A1B0GWG4 89 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ZG16O60844 167 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CFPP27918 469 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ZNF137PP52743 207 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 KRTCAP3Q53RY4 240 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 LRRC10Q5BKY1 277 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 RPP25LQ8N5L8 163 aaKnown RBP8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ELOVL5Q9NYP7 299 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 SPCS1Q9Y6A9 102 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 NUP210LQ5VU65 1888 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 A0A0G2JNJ9 132 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 FOXL1Q12952 345 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 SPRNQ5BIV9 151 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TEX43Q6ZNM6 134 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 WDR31Q8NA23 367 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 NAA38Q9BRA0 125 aaKnown RBP8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 Q9UFV3 132 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 HILPDAQ9Y5L2 63 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 SCO2A0A1W2PP80 73 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 OR2T8A6NH00 312 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 HLA-DRB1P01911 266 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CSN1S1P47710 185 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TBR1Q16650 682 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TIMM23BQ5SRD1 257 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ABHD12Q8N2K0 398 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 OR8A1Q8NGG7 326 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 FAM57AQ8TBR7 257 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 A1L4Q6 167 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 OR4S2Q8NH73 311 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 HSD17B10Q99714 261 aaKnown RBP8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 SSBP3Q9BWW4 388 aaPredicted RBP8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CSTL1Q9H114 145 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TMEM167BQ9NRX6 74 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 MRPS16Q9Y3D3 137 aaKnown RBP8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TMEM56-RWDD3S4R434 201 aa8.92□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IGHV3OR16-10A0A075B7F0 116 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IGKV1-6A0A0C4DH72 117 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 K7EQM0 130 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CA7P43166 264 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 NMUP48645 174 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 LGALS4P56470 323 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TMPRSS3P57727 454 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 RBX1P62877 108 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 OR2K2Q8NGT1 345 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 OCC1Q8TAD7 63 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TNFRSF14Q92956 283 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 RBFOX2O43251 390 aaKnown RBP eCLIP8.91□□□□□ -0.981e-6■■□□□ 14.1
MSH5-SAPCD1-207ENST00000493662 REG1AP05451 166 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 GRNP28799 593 aaKnown RBP8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 FOXA3P55318 350 aaPredicted RBP8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 MIC13Q5XKP0 118 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 Q6ZR03 302 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PKIBQ9C010 78 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IL36GQ9NZH8 169 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PPIAL4EA0A075B759 164 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PLAUP00749 431 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PPIAL4FP0DN26 164 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CRYBB3P26998 211 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 GLRXP35754 106 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PRSS8Q16651 343 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IGFBPL1Q8WX77 278 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 AGMATQ9BSE5 352 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CALYQ9NYX4 217 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 FAM215AQ9Y5M1 114 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 KIAA1549Q9HCM3 1950 aa8.91□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 NCBP2LA6PVI3 153 aaKnown RBP8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 GCSHP23434 173 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ARF6P62330 175 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TMEM42Q69YG0 159 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 Q6ZS92 163 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 OR10W1Q8NGF6 305 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 JKAMPQ9P055 326 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ZFHX4Q86UP3 3567 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 MUC21A0A0G2JKD1 596 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 MUC21A0A140T8X8 626 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 GPR183P32249 361 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PAX2Q02962 417 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TFF3Q07654 80 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 RTL8BQ17RB0 113 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 MUC21Q5SSG8 566 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 FOXL2NBQ6ZUU3 175 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 NHLRC2Q8NBF2 726 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 OR1N2Q8NGR9 330 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ADTRPQ96IZ2 230 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TIMM9Q9Y5J7 89 aa8.9□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 A0A0G2JRQ6 117 aa8.9□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 hADV38S2A0JD32 116 aa8.9□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MGST3O14880 152 aa8.9□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MYOD1P15172 320 aa8.9□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MTURNQ8N3F0 131 aa8.9□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 OR10AG1Q8NH19 301 aa8.9□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TRAV9-1A0A075B6T8 112 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 NUPR1O60356 82 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CENPWQ5EE01 88 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 Q8NFD4 153 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms