RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 TMEM219Q86XT9 240 aa4.95□□□□□ -1.62
CLK1-210ENST00000473565 CLRN3Q8NCR9 226 aa4.95□□□□□ -1.62
CLK1-210ENST00000473565 OR2T10Q8NGZ9 312 aa4.95□□□□□ -1.62
CLK1-210ENST00000473565 SLC45A2Q9UMX9 530 aa4.95□□□□□ -1.62
CLK1-210ENST00000473565 IGKV1D-37A0A075B6S9 117 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 PAGE4O60829 102 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 AVPP01185 164 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 CD81P60033 236 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 PRR20EP86478 221 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 PRR20CP86479 221 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 PRR20DP86480 221 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 PRR20BP86481 221 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 PRR20AP86496 221 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 PAX8Q06710 450 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 FAM78BQ5VT40 261 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 SUN5Q8TC36 379 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 ACANP16112 2415 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 TRAV5A0A0B4J249 113 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 A0A0U1RQK1 487 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 INS-IGF2F8WCM5 200 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 NDUFA3O95167 84 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 MT-CO2P00403 227 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 HSPB1P04792 205 aaKnown RBP4.94□□□□□ -1.62
CLK1-210ENST00000473565 SUB1P53999 127 aaKnown RBP eCLIP4.94□□□□□ -1.62
CLK1-210ENST00000473565 CX3CL1P78423 397 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 RAB31Q13636 194 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 MINOS1Q5TGZ0 78 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 CCDC144NLQ6NUI1 221 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 Q8N6K4 173 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 NPBQ8NG41 125 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 C22orf15Q8WYQ4 148 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 UHRF2Q96PU4 802 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 HSPB9Q9BQS6 159 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 WNT10AQ9GZT5 417 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 RPS10P5Q9NQ39 176 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 MINOS1-NBL1R4GNA1 71 aa4.94□□□□□ -1.62
CLK1-210ENST00000473565 LINC01548A6NM66 108 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 SEC14L6B5MCN3 397 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 GOSR1O95249 250 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 SNAPINO95295 136 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 RPL29P47914 159 aaKnown RBP4.93□□□□□ -1.62
CLK1-210ENST00000473565 ATP5G3P48201 142 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 ZNF674Q2M3X9 581 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 KHDC3LQ587J8 217 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 ASPHD1Q5U4P2 390 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 FAM90A2PQ658T7 463 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 OR51G1Q8NGK1 321 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 OR4F5Q8NH21 305 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 TMEM37Q8WXS4 190 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 RPUSD4Q96CM3 377 aaKnown RBP4.93□□□□□ -1.62
CLK1-210ENST00000473565 OR4F4Q96R69 305 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 C7orf69Q9H7B7 122 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 HIF1ANQ9NWT6 349 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 F11RQ9Y624 299 aaKnown RBP4.93□□□□□ -1.62
CLK1-210ENST00000473565 PDZD2O15018 2839 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 H3BQ15 152 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 NDUFS8O00217 210 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 MSMBP08118 114 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 MAS1LP35410 378 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 GPX4P36969 197 aaPredicted RBP4.93□□□□□ -1.62
CLK1-210ENST00000473565 CST9LP1Q5W188 147 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 CYP2G1PQ6ZSU1 146 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 SLC35E3Q7Z769 313 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 OR5T1Q8NG75 326 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 RNASEH2CQ8TDP1 164 aaKnown RBP4.93□□□□□ -1.62
CLK1-210ENST00000473565 ISOC2Q96AB3 205 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 MALSU1Q96EH3 234 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 RNF5Q99942 180 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 NOTCH2Q04721 2471 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 C7orf77A4D0Y5 90 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 RNF223E7ERA6 249 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 IGHV3-23P01764 117 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 OR10J4P0C629 311 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 STAG3L2P0CL84 134 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 STAG3L3P0CL85 134 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 MEF2BQ02080 365 aaPredicted RBP4.93□□□□□ -1.62
CLK1-210ENST00000473565 LY6EQ16553 131 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 SPNS3Q6ZMD2 512 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 Q8N9W7 124 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 OR1P1Q8NH06 330 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 CACNG8Q8WXS5 425 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 ARPC1AQ92747 370 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 VAX2Q9UIW0 290 aa4.93□□□□□ -1.62
CLK1-210ENST00000473565 TBL2Q9Y4P3 447 aaKnown RBP4.93□□□□□ -1.62
CLK1-210ENST00000473565 CR1P17927 2039 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 IGHV1-69DA0A0B4J2H0 117 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 MDFIC2A0A1B0GVS7 189 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 ZNF727A8MUV8 499 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 IGHV1-69P01742 117 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 CTRB1P17538 263 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 PSMB3P49720 205 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 RHOBP62745 196 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 CTRB2Q6GPI1 263 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 PATE2Q6UY27 113 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 AURKAIP1Q9NWT8 199 aaPredicted RBP4.92□□□□□ -1.62
CLK1-210ENST00000473565 LINC00527Q9UJ94 153 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 YTHDF2Q9Y5A9 579 aaKnown RBP4.92□□□□□ -1.62
CLK1-210ENST00000473565 NF1P21359 2839 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 MYO9AB2RTY4 2548 aa4.92□□□□□ -1.62
CLK1-210ENST00000473565 AKAP9Q99996 3911 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms