RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 MRPL36Q9P0J6 103 aaKnown RBP15.08■□□□□ 0
USP39-202ENST00000409025 SPTAN1Q13813 2472 aaKnown RBP15.08■□□□□ 0
USP39-202ENST00000409025 C11orf94C9JXX5 98 aa15.07■□□□□ 0
USP39-202ENST00000409025 PAX1P15863 534 aa15.07■□□□□ 0
USP39-202ENST00000409025 SELENOTP62341 195 aa15.07■□□□□ 0
USP39-202ENST00000409025 MIR17HGQ75NE6 70 aa15.07■□□□□ 0
USP39-202ENST00000409025 WNK2Q9Y3S1 2297 aa15.07■□□□□ 0
USP39-202ENST00000409025 USP9XQ93008 2570 aaPredicted RBP15.07■□□□□ 0
USP39-202ENST00000409025 IGKV1D-37A0A075B6S9 117 aa15.07■□□□□ 0
USP39-202ENST00000409025 CENPVL3A0A0U1RRI6 287 aa15.07■□□□□ 0
USP39-202ENST00000409025 OR5G3P0C626 314 aa15.07■□□□□ 0
USP39-202ENST00000409025 GCHFRP30047 84 aa15.07■□□□□ 0
USP39-202ENST00000409025 UBE2G2P60604 165 aa15.07■□□□□ 0
USP39-202ENST00000409025 NRGNQ92686 78 aa15.07■□□□□ 0
USP39-202ENST00000409025 WNT10AQ9GZT5 417 aa15.07■□□□□ 0
USP39-202ENST00000409025 ZNF727A8MUV8 499 aa15.06■□□□□ 0
USP39-202ENST00000409025 CST9LP1Q5W188 147 aa15.06■□□□□ 0
USP39-202ENST00000409025 ZNF562Q6V9R5 426 aa15.06■□□□□ 0
USP39-202ENST00000409025 TMEM116Q8NCL8 245 aa15.06■□□□□ 0
USP39-202ENST00000409025 RNF2Q99496 336 aa15.06■□□□□ 0
USP39-202ENST00000409025 TXNDC17Q9BRA2 123 aa15.06■□□□□ 0
USP39-202ENST00000409025 TECRQ9NZ01 308 aaKnown RBP15.06■□□□□ 0
USP39-202ENST00000409025 C1RLQ9NZP8 487 aa15.06■□□□□ 0
USP39-202ENST00000409025 CTRB1P17538 263 aa15.05■□□□□ 0
USP39-202ENST00000409025 PNRC1Q12796 327 aaPredicted RBP15.05■□□□□ 0
USP39-202ENST00000409025 CTRB2Q6GPI1 263 aa15.05■□□□□ 0
USP39-202ENST00000409025 OR1L6Q8NGR2 347 aa15.05■□□□□ 0
USP39-202ENST00000409025 MRPL32Q9BYC8 188 aaKnown RBP15.05■□□□□ 0
USP39-202ENST00000409025 DMRT1Q9Y5R6 373 aa15.05■□□□□ 0
USP39-202ENST00000409025 ZNF462Q96JM2 2506 aa15.05■□□□□ -0
USP39-202ENST00000409025 KMT2BQ9UMN6 2715 aaPredicted RBP15.05■□□□□ -0
USP39-202ENST00000409025 PDE6DO43924 150 aa15.05■□□□□ -0
USP39-202ENST00000409025 ATF4P18848 351 aaPredicted RBP15.05■□□□□ -0
USP39-202ENST00000409025 TAS2R45P59539 299 aa15.05■□□□□ -0
USP39-202ENST00000409025 ZNF90Q03938 601 aa15.05■□□□□ -0
USP39-202ENST00000409025 PIP4P2Q8N4L2 257 aa15.05■□□□□ -0
USP39-202ENST00000409025 OR1L4Q8NGR5 311 aa15.05■□□□□ -0
USP39-202ENST00000409025 PFDN5Q99471 154 aa15.05■□□□□ -0
USP39-202ENST00000409025 TRGV9Q99603 122 aa15.05■□□□□ -0
USP39-202ENST00000409025 SMIM7Q9BQ49 75 aa15.05■□□□□ -0
USP39-202ENST00000409025 TUBA4BQ9H853 241 aa15.05■□□□□ -0
USP39-202ENST00000409025 DNAJC4Q9NNZ3 241 aa15.05■□□□□ -0
USP39-202ENST00000409025 TNFRSF19Q9NS68 423 aa15.05■□□□□ -0
USP39-202ENST00000409025 IGHV3-21A0A0B4J1V1 117 aa15.04■□□□□ -0
USP39-202ENST00000409025 CLN5O75503 358 aa15.04■□□□□ -0
USP39-202ENST00000409025 CX3CL1P78423 397 aa15.04■□□□□ -0
USP39-202ENST00000409025 ZNF674Q2M3X9 581 aa15.04■□□□□ -0
USP39-202ENST00000409025 FAM120AOSQ5T036 256 aa15.04■□□□□ -0
USP39-202ENST00000409025 C15orf54Q8N8G6 183 aa15.04■□□□□ -0
USP39-202ENST00000409025 TMEM37Q8WXS4 190 aa15.04■□□□□ -0
USP39-202ENST00000409025 ARPC1AQ92747 370 aa15.04■□□□□ -0
USP39-202ENST00000409025 RPUSD4Q96CM3 377 aaKnown RBP15.04■□□□□ -0
USP39-202ENST00000409025 FAM103A1Q9BTL3 118 aaKnown RBP15.04■□□□□ -0
USP39-202ENST00000409025 SDF2L1Q9HCN8 221 aa15.04■□□□□ -0
USP39-202ENST00000409025 MED13LQ71F56 2210 aa15.04■□□□□ -0
USP39-202ENST00000409025 FLNCQ14315 2725 aa15.04■□□□□ -0
USP39-202ENST00000409025 PSMB11A5LHX3 300 aa15.04■□□□□ -0
USP39-202ENST00000409025 B4DEV8 164 aa15.04■□□□□ -0
USP39-202ENST00000409025 COX7A2P2O60397 106 aa15.04■□□□□ -0
USP39-202ENST00000409025 ATP5G3P48201 142 aa15.04■□□□□ -0
USP39-202ENST00000409025 BPIFB3P59826 476 aa15.04■□□□□ -0
USP39-202ENST00000409025 PARLQ9H300 379 aa15.04■□□□□ -0
USP39-202ENST00000409025 NAT8Q9UHE5 227 aa15.04■□□□□ -0
USP39-202ENST00000409025 A0A087WWC5 75 aa15.03■□□□□ -0
USP39-202ENST00000409025 F6UZH7 168 aa15.03■□□□□ -0
USP39-202ENST00000409025 I3L2K1 104 aa15.03■□□□□ -0
USP39-202ENST00000409025 RUSC1-AS1Q66K80 236 aa15.03■□□□□ -0
USP39-202ENST00000409025 PQLC2Q6ZP29 291 aa15.03■□□□□ -0
USP39-202ENST00000409025 OR4X1Q8NH49 305 aa15.03■□□□□ -0
USP39-202ENST00000409025 TMEM167BQ9NRX6 74 aa15.03■□□□□ -0
USP39-202ENST00000409025 IGHV1-69DA0A0B4J2H0 117 aa15.02■□□□□ -0
USP39-202ENST00000409025 IGHV1-69P01742 117 aa15.02■□□□□ -0
USP39-202ENST00000409025 C8orf88P0DMB2 117 aa15.02■□□□□ -0
USP39-202ENST00000409025 TMEM241Q24JQ0 296 aa15.02■□□□□ -0
USP39-202ENST00000409025 C10orf113Q5VZT2 155 aa15.02■□□□□ -0
USP39-202ENST00000409025 COLCA2A8K830 154 aa15.02□□□□□ -0.01
USP39-202ENST00000409025 MSMBP08118 114 aa15.02□□□□□ -0.01
USP39-202ENST00000409025 SLC25A16P16260 332 aa15.02□□□□□ -0.01
USP39-202ENST00000409025 CLEC12BQ2HXU8 276 aa15.02□□□□□ -0.01
USP39-202ENST00000409025 Q8N9W7 124 aa15.02□□□□□ -0.01
USP39-202ENST00000409025 DOK5Q9P104 306 aa15.02□□□□□ -0.01
USP39-202ENST00000409025 NPIPB5A8MRT5 1133 aa15.01□□□□□ -0.01
USP39-202ENST00000409025 OR7C2O60412 319 aa15.01□□□□□ -0.01
USP39-202ENST00000409025 KIAA0141Q14154 515 aaPredicted RBP15.01□□□□□ -0.01
USP39-202ENST00000409025 RASL11BQ9BPW5 248 aa15.01□□□□□ -0.01
USP39-202ENST00000409025 TACC2O95359 2948 aa15.01□□□□□ -0.01
USP39-202ENST00000409025 MYO18BQ8IUG5 2567 aa15□□□□□ -0.01
USP39-202ENST00000409025 OR2C1O95371 312 aa15□□□□□ -0.01
USP39-202ENST00000409025 ISOC2Q96AB3 205 aa15□□□□□ -0.01
USP39-202ENST00000409025 YTHDF2Q9Y5A9 579 aaKnown RBP15□□□□□ -0.01
USP39-202ENST00000409025 ARL2-SNX15V9GYD0 113 aa15□□□□□ -0.01
USP39-202ENST00000409025 IGHV3OR16-10A0A075B7F0 116 aa15□□□□□ -0.01
USP39-202ENST00000409025 ELOA3CA0A087WX78 387 aaPredicted RBP15□□□□□ -0.01
USP39-202ENST00000409025 TRAV40A0A0B4J280 105 aa15□□□□□ -0.01
USP39-202ENST00000409025 HLA-DRB1P01911 266 aa15□□□□□ -0.01
USP39-202ENST00000409025 NDPQ00604 133 aa15□□□□□ -0.01
USP39-202ENST00000409025 ASPHD1Q5U4P2 390 aa15□□□□□ -0.01
USP39-202ENST00000409025 PATE2Q6UY27 113 aa15□□□□□ -0.01
USP39-202ENST00000409025 TTC9CQ8N5M4 171 aa15□□□□□ -0.01
USP39-202ENST00000409025 COL12A1Q99715 3063 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms