RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ADTRPQ96IZ2 230 aa16.75■□□□□ 0.27
CLK3-202ENST00000395066 RNASE2P10153 161 aaKnown RBP16.75■□□□□ 0.27
CLK3-202ENST00000395066 POU2AF1Q16633 256 aa16.75■□□□□ 0.27
CLK3-202ENST00000395066 ZFP30Q9Y2G7 519 aa16.75■□□□□ 0.27
CLK3-202ENST00000395066 FCN3O75636 299 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 SRIP30626 198 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 DMRTA1Q5VZB9 504 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 TECRQ9NZ01 308 aaKnown RBP16.74■□□□□ 0.27
CLK3-202ENST00000395066 UQCR10Q9UDW1 63 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 ZNF324O75467 553 aaPredicted RBP16.74■□□□□ 0.27
CLK3-202ENST00000395066 AMY1AP04745 511 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 LHFPL4Q7Z7J7 247 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 SLC35E1Q96K37 410 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 HARBI1Q96MB7 349 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 CBY1Q9Y3M2 126 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 SPTBN2O15020 2390 aa16.74■□□□□ 0.27
CLK3-202ENST00000395066 BMPR1BO00238 502 aa16.73■□□□□ 0.27
CLK3-202ENST00000395066 ISLRO14498 428 aa16.73■□□□□ 0.27
CLK3-202ENST00000395066 MRPL54Q6P161 138 aaKnown RBP16.73■□□□□ 0.27
CLK3-202ENST00000395066 ANKRD11Q6UB99 2663 aaPredicted RBP16.73■□□□□ 0.27
CLK3-202ENST00000395066 HLA-DQA1P01909 254 aa16.73■□□□□ 0.27
CLK3-202ENST00000395066 CD40P25942 277 aa16.73■□□□□ 0.27
CLK3-202ENST00000395066 C11orf42Q8N5U0 333 aa16.73■□□□□ 0.27
CLK3-202ENST00000395066 SERTAD4Q9NUC0 356 aa16.73■□□□□ 0.27
CLK3-202ENST00000395066 RIF1Q5UIP0 2472 aaKnown RBP16.72■□□□□ 0.27
CLK3-202ENST00000395066 FNDC10F2Z333 226 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 SELENOVP59797 346 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 IBA57Q5T440 356 aaKnown RBP16.72■□□□□ 0.27
CLK3-202ENST00000395066 CDC42EP3Q9UKI2 254 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 ZNF257Q9Y2Q1 563 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 SIAH2O43255 324 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 C3orf79P0CE67 100 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 IGLC2P0DOY2 106 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 IGLC3P0DOY3 106 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 PYYP10082 97 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 PRR31Q5SQ13 230 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 C1orf185Q5T7R7 199 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 TACC2O95359 2948 aa16.72■□□□□ 0.27
CLK3-202ENST00000395066 HYPMO75409 117 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 IGLV2-8P01709 118 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 PRRX1P54821 245 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 NIT1Q86X76 327 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 TXN2Q99757 166 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 SSBP3Q9BWW4 388 aaPredicted RBP16.71■□□□□ 0.27
CLK3-202ENST00000395066 RAB9BQ9NP90 201 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 PPIAL4AQ9Y536 164 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 SMIM27A0A1W2PRY6 76 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 C2orf83Q53S99 150 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 Q6ZN92 141 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 FAM168AQ92567 244 aa16.71■□□□□ 0.27
CLK3-202ENST00000395066 ZGRF1Q86YA3 2104 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 DPRXA6NFQ7 191 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 PLAUP00749 431 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 REG1AP05451 166 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 CD69Q07108 199 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 FAM19A2Q8N3H0 131 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 TSKUQ8WUA8 353 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 SLC25A33Q9BSK2 321 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 COMMD5Q9GZQ3 224 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 NCOR1P1Q9H4R4 102 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 CEACAM4O75871 244 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 STPG4Q8N801 248 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 SLC25A2Q9BXI2 301 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 DNAJC4Q9NNZ3 241 aa16.7■□□□□ 0.26
CLK3-202ENST00000395066 TRAV34A0A0B4J273 112 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 hADV38S2A0JD32 116 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 APCSP02743 223 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 PPOXP50336 477 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 HNRNPA3P51991 378 aaKnown RBP16.69■□□□□ 0.26
CLK3-202ENST00000395066 UBE2L3P68036 154 aaKnown RBP16.69■□□□□ 0.26
CLK3-202ENST00000395066 H1FXQ92522 213 aaKnown RBP16.69■□□□□ 0.26
CLK3-202ENST00000395066 IGF2BP2-AS1Q96M15 143 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 WNT10AQ9GZT5 417 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 MRPL36Q9P0J6 103 aaKnown RBP16.69■□□□□ 0.26
CLK3-202ENST00000395066 SH3BGRL2Q9UJC5 107 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 TNFSF4P23510 183 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 TAS2R45P59539 299 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 PRB3Q04118 309 aaPredicted RBP16.69■□□□□ 0.26
CLK3-202ENST00000395066 WFDC8Q8IUA0 241 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 FAM167A-AS1Q96KT0 104 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 FNDC4Q9H6D8 234 aaPredicted RBP16.69■□□□□ 0.26
CLK3-202ENST00000395066 BET1LQ9NYM9 111 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 LAMTOR2Q9Y2Q5 125 aa16.69■□□□□ 0.26
CLK3-202ENST00000395066 H0YJW9 148 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 C8orf88P0DMB2 117 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 NTF3P20783 257 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 RUSC1-AS1Q66K80 236 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 C19orf35Q6ZS72 473 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 BORCS7Q96B45 105 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 ABCA1O95477 2261 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 IZUMO1RA6ND01 250 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 TCF21O43680 179 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 APELAP0DMC3 54 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 WT1-ASQ06250 92 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 ZNF833PQ6ZTB9 187 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 SGK494Q96LW2 274 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 NDUFA4L2Q9NRX3 87 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 CSMD1Q96PZ7 3565 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 ACACAQ13085 2346 aa16.68■□□□□ 0.26
CLK3-202ENST00000395066 CUL9Q8IWT3 2517 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms