RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 RNASE2P10153 161 aaKnown RBP16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 PPOXP50336 477 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 TNFAIP6P98066 277 aaPredicted RBP16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 ZNF474Q6S9Z5 364 aaPredicted RBP16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 TMEM136Q6ZRR5 245 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 OR4B1Q8NGF8 309 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 RBM14Q96PK6 669 aaKnown RBP16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 SLC25A33Q9BSK2 321 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 ZNF586Q9NXT0 402 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 GATA2P23769 480 aaPredicted RBP16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 SELENOVP59797 346 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 RELQ04864 619 aaPredicted RBP16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 CD69Q07108 199 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 CYB5R2Q6BCY4 276 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 ZNF788Q6ZQV5 615 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 DCAF16Q9NXF7 216 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 FBXL7Q9UJT9 491 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 MMP23AO75900 390 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 IGLV2-8P01709 118 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 SUMO1P63165 101 aaKnown RBP16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 IGF2BP2-AS1Q96M15 143 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 RNF2Q99496 336 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 CCL13Q99616 98 aa16.39■□□□□ 0.21
SYNGAP1-227ENST00000638142 NPSP0C0P6 89 aa16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 SAA1P0DJI8 122 aaPredicted RBP16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 WT1P19544 449 aaPredicted RBP16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 IBA57Q5T440 356 aaKnown RBP16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 Q8N976 141 aa16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 DEFB108BQ8NET1 73 aa16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 OR9G1Q8NH87 305 aa16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 CACNG8Q8WXS5 425 aa16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 SMIM27A0A1W2PRY6 76 aa16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 IGHV1-46P01743 117 aa16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 FXYD3Q14802 87 aa16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 FAM216BQ8N7L0 139 aa16.38■□□□□ 0.21
SYNGAP1-227ENST00000638142 HLA-DQA1P01909 254 aa16.37■□□□□ 0.21
SYNGAP1-227ENST00000638142 AMY1AP04745 511 aa16.37■□□□□ 0.21
SYNGAP1-227ENST00000638142 OSR1Q8TAX0 266 aaPredicted RBP16.37■□□□□ 0.21
SYNGAP1-227ENST00000638142 SFTPCP11686 197 aa16.37■□□□□ 0.21
SYNGAP1-227ENST00000638142 TNFSF4P23510 183 aa16.37■□□□□ 0.21
SYNGAP1-227ENST00000638142 ASCL3Q9NQ33 180 aa16.37■□□□□ 0.21
SYNGAP1-227ENST00000638142 RNF114Q9Y508 228 aa16.37■□□□□ 0.21
SYNGAP1-227ENST00000638142 CADP27708 2225 aa16.37■□□□□ 0.21
SYNGAP1-227ENST00000638142 hADV38S2A0JD32 116 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 SPINK4O60575 86 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 ZNF833PQ6ZTB9 187 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 KCNS1Q96KK3 526 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 COL25A1Q9BXS0 654 aaPredicted RBP16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 NBEAQ8NFP9 2946 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 DIRC3C9JPN6 131 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 DLL1O00548 723 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 CTRLP40313 264 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 MLANAQ16655 118 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 ZNF714Q96N38 554 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 COMMD5Q9GZQ3 224 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 CDC42EP3Q9UKI2 254 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 TBL2Q9Y4P3 447 aaKnown RBP16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 LINC00312Q9Y6C7 94 aa16.36■□□□□ 0.21
SYNGAP1-227ENST00000638142 TNCP24821 2201 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 PSMB11A5LHX3 300 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 APOA2P02652 100 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 MGST1P10620 155 aaKnown RBP16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 TCL1AP56279 114 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 KRTDAPP60985 99 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 COL5A1-AS1Q5SY13 56 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 FAM167A-AS1Q96KT0 104 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 NDUFA4L2Q9NRX3 87 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 RAI1Q7Z5J4 1906 aaPredicted RBP16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 INS-IGF2F8WCM5 200 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 UBE2L3P68036 154 aaKnown RBP16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 ERHP84090 104 aaKnown RBP16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 TEX36Q5VZQ5 186 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 OR10W1Q8NGF6 305 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 NRN1Q9NPD7 142 aa16.35■□□□□ 0.21
SYNGAP1-227ENST00000638142 RND1Q92730 232 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 HARBI1Q96MB7 349 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 FAM103A1Q9BTL3 118 aaKnown RBP16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 SLC25A2Q9BXI2 301 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 DNAJC4Q9NNZ3 241 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 ZNRD1Q9P1U0 126 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 REG1AP05451 166 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 AMTP48728 403 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 SLC35B1P78383 322 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 DEFB109BQ30KR1 87 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 GAL3ST2Q9H3Q3 398 aa16.34■□□□□ 0.21
SYNGAP1-227ENST00000638142 DSPP15924 2871 aaKnown RBP16.33■□□□□ 0.21
SYNGAP1-227ENST00000638142 IZUMO1RA6ND01 250 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 BMPR1BO00238 502 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 ZNF253O75346 499 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 RPL8P62917 257 aaKnown RBP16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 BATFQ16520 125 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 KIAA1644Q3SXP7 199 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 ZADH2Q8N4Q0 377 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 MRPL20Q9BYC9 149 aaKnown RBP16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 SERTAD4Q9NUC0 356 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 FAM215AQ9Y5M1 114 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 A0A1W2PS18 150 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 CEACAM4O75871 244 aa16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 MRPL54Q6P161 138 aaKnown RBP16.33■□□□□ 0.2
SYNGAP1-227ENST00000638142 SRIP30626 198 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 119.6 ms