RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 RNASEH2CQ8TDP1 164 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 TXN2Q99757 166 aa12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 RBKSQ9H477 322 aa12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 DMRT1Q9Y5R6 373 aa12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 IGHV3-11P01762 117 aa12.79□□□□□ -0.36
SHKBP1-219ENST00000599575 FCGR2BP31994 310 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-219ENST00000599575 TATDN3Q17R31 274 aa12.79□□□□□ -0.36
SHKBP1-219ENST00000599575 SPINK9Q5DT21 86 aa12.79□□□□□ -0.36
SHKBP1-219ENST00000599575 GSG1LQ6UXU4 331 aa12.79□□□□□ -0.36
SHKBP1-219ENST00000599575 ETV3LQ6ZN32 361 aa12.79□□□□□ -0.36
SHKBP1-219ENST00000599575 C18orf65Q6ZTR6 163 aa12.79□□□□□ -0.36
SHKBP1-219ENST00000599575 ZBTB8BQ8NAP8 495 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-219ENST00000599575 TRRAPQ9Y4A5 3859 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 RPS10-NUDT3A0A1W2PQS6 291 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 C5orf51A6NDU8 294 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 MPTX1A8MV57 137 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 WRBO00258 174 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 NPY1RP25929 384 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 MFAP2P55001 183 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 CYCSP99999 105 aaKnown RBP12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 OXA1LQ15070 435 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 HIST2H2BDQ6DRA6 164 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 C19orf35Q6ZS72 473 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 LINC00482Q8N8I6 264 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 ZNF502Q8TBZ5 544 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 OR10C1Q96KK4 312 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 C2orf50Q96LR7 162 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 OR5B12Q96R08 314 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 MCRIP2Q9BUT9 160 aaKnown RBP12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 GPR61Q9BZJ8 451 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 C21orf62Q9NYP8 219 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 MGAM2Q2M2H8 2515 aa12.78□□□□□ -0.36
SHKBP1-219ENST00000599575 I3L2K1 104 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 K7EIM0 57 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 IFNA10P01566 189 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 SPNP16150 400 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 TAS2R30P59541 319 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 DEFB136Q30KP8 78 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 ETFRF1Q6IPR1 90 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 SPSB3Q6PJ21 355 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 SCARB1Q8WTV0 552 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 BSCL2Q96G97 398 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 RCC1LQ96I51 464 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 RAB40CQ96S21 281 aa12.77□□□□□ -0.37
SHKBP1-219ENST00000599575 SSNA1O43805 119 aa12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 GGCTO75223 188 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 SCGB2A1O75556 95 aa12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 SLC25A4P12235 298 aa12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 CD33P20138 364 aa12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 NPBWR1P48145 328 aa12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 MFAP4P55083 255 aa12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 RAB11AP62491 216 aa12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 MISP3Q96FF7 219 aa12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 GSKIPQ9P0R6 139 aa12.76□□□□□ -0.37
SHKBP1-219ENST00000599575 IGHV4OR15-8A0A075B7B6 117 aa12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 A0A087WW49 117 aa12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 MFSD2BA6NFX1 497 aa12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 FAM25EA8MYX2 175 aa12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 SCAF4O95104 1147 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 NXPH3O95157 252 aa12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 MT-CO2P00403 227 aa12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 CLEC3BP05452 202 aa12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 SMIM8Q96KF7 97 aa12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 CCDC140Q96MF4 163 aa12.75□□□□□ -0.37
SHKBP1-219ENST00000599575 ANKRD34BA5PLL1 514 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 CCSO14618 274 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 HOXD3P31249 432 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 ARL3P36405 182 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 GPX4P36969 197 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 OPRK1P41145 380 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 IL15RAQ13261 267 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 KLF5Q13887 457 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 RPEL1Q2QD12 228 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 CLEC19AQ6UXS0 136 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 GPHB5Q86YW7 130 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 CACNG8Q8WXS5 425 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 PINX1Q96BK5 328 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 NMES1Q9C002 83 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 MAGT1Q9H0U3 335 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 WNK1Q9H4A3 2382 aa12.74□□□□□ -0.37
SHKBP1-219ENST00000599575 BMPR1BO00238 502 aa12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 TGOLN2O43493 480 aa12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 TSC22D2O75157 780 aa12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 MBPP02686 304 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 IFNA4P05014 189 aa12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 PVALBP20472 110 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 INSL3P51460 131 aa12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 POLR2GP62487 172 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 DEFA5Q01523 94 aa12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 ASB13Q8WXK3 278 aa12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 DUX3Q96PT4 197 aa12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 STRAPQ9Y3F4 350 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 ALG5Q9Y673 324 aa12.73□□□□□ -0.37
SHKBP1-219ENST00000599575 TRAV30A0A087WSZ9 112 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 LGALS9O00182 355 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 GOSR2O14653 212 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 OVOL1O14753 267 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 NUPL2O15504 423 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 IAPPP10997 89 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 FAM106AQ4KMX7 169 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms