RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 DEFA5Q01523 94 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 FOXE3Q13461 319 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 LCNL1Q6ZST4 164 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 OR1L6Q8NGR2 347 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 TMEM170AQ8WVE7 144 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 DCUN1D4Q92564 292 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 MISP3Q96FF7 219 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 FANCD2OSQ96PS1 177 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 OR4C12Q96R67 309 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 C19orf24Q9BVV8 132 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 KLK15Q9H2R5 256 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 C11orf1Q9H5F2 150 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 MBD2Q9UBB5 411 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 DMRT1Q9Y5R6 373 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 FBN1P35555 2871 aaKnown RBP7.5□□□□□ -1.21
CUX1-216ENST00000558469 IGLV11-55A0A075B6I3 123 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 TRBV9A0A0B4J1U6 114 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 FAM24AA6NFZ4 105 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 C15orf62A8K5M9 175 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 H3BUA1 57 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 TSC22D2O75157 780 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 OR2J3O76001 311 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 IFNA4P05014 189 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 RPLP1P05386 114 aaKnown RBP7.49□□□□□ -1.21
CUX1-216ENST00000558469 OR8U8P0C7N1 319 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 PSMB8P28062 276 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 P2RY1P47900 373 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 RAB9AP51151 201 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 ATP5IP56385 69 aaPredicted RBP7.49□□□□□ -1.21
CUX1-216ENST00000558469 RAB11AP62491 216 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 RHOGP84095 191 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 CD300CQ08708 224 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 AWAT1Q58HT5 328 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 OXLD1Q5BKU9 147 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 NOXA1Q86UR1 476 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 COMMD1Q8N668 190 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 OR4X2Q8NGF9 303 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 WIPF2Q8TF74 440 aaPredicted RBP7.49□□□□□ -1.21
CUX1-216ENST00000558469 TMEM158Q8WZ71 300 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 PINX1Q96BK5 328 aaKnown RBP7.49□□□□□ -1.21
CUX1-216ENST00000558469 SLA2Q9H6Q3 261 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 LYRM2Q9NU23 88 aaPredicted RBP7.49□□□□□ -1.21
CUX1-216ENST00000558469 THYN1Q9P016 225 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 FBXL7Q9UJT9 491 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 ATRQ13535 2644 aa7.49□□□□□ -1.21
CUX1-216ENST00000558469 FXYD6-FXYD2A0A087WZ82 144 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 IGHV3-21A0A0B4J1V1 117 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 IGSF23A1L1A6 192 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 G3V3Q6 166 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 NDUFB8O95169 186 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 BRI3O95415 125 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 ELANEP08246 267 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 METTL15P1P0C7V9 234 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 CD28P10747 220 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 LYL1P12980 280 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 C15orf32Q32M92 178 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 TCTEX1D4Q5JR98 221 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 PVRIGQ6DKI7 326 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 HIST2H2BDQ6DRA6 164 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 OR8G2PQ6IF36 304 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 TMEM14EPQ6UXP3 125 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 ETV3LQ6ZN32 361 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 ZNF546Q86UE3 836 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 TCTE3Q8IZS6 198 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 C11orf44Q8N8P7 122 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 NECAP1Q8NC96 275 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 NEURL2Q9BR09 285 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 S4R3C0 116 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 TENM1Q9UKZ4 2725 aa7.48□□□□□ -1.21
CUX1-216ENST00000558469 TCRBV4S1A1TA0A5B7 111 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 FAM223BA6NKX1 122 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 I3L2K1 104 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 CORTO00230 105 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 PFDN1O60925 122 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 CST7O76096 145 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 MT-CO2P00403 227 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 IGHV3-48P01763 117 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 IGHV3-23P01764 117 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 SLC25A4P12235 298 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 RPL12P30050 165 aaKnown RBP7.47□□□□□ -1.21
CUX1-216ENST00000558469 NUP62P37198 522 aaPredicted RBP7.47□□□□□ -1.21
CUX1-216ENST00000558469 OPRK1P41145 380 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 KRTAP10-3P60369 221 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 NHLH2Q02577 135 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 ATP5G2Q06055 141 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 EXOSC2Q13868 293 aaKnown RBP7.47□□□□□ -1.21
CUX1-216ENST00000558469 KIAA0141Q14154 515 aaPredicted RBP7.47□□□□□ -1.21
CUX1-216ENST00000558469 MLANAQ16655 118 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 KLK9Q2XQG4 91 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 KHDC1LQ5JSQ8 128 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 FAM223AQ8IWN6 122 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 TMEM252Q8N6L7 170 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 ZNF491Q8N8L2 437 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 RNF152Q8N8N0 203 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 RNASEH2CQ8TDP1 164 aaKnown RBP7.47□□□□□ -1.21
CUX1-216ENST00000558469 USMG5Q96IX5 58 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 SLC25A31Q9H0C2 315 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 ZC4H2Q9NQZ6 224 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 KLK9Q9UKQ9 250 aa7.47□□□□□ -1.21
CUX1-216ENST00000558469 A0A0G2JLM5 398 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms