RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 TCF23Q7RTU1 214 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 SPATA12Q7Z6I5 190 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 ZNRF2Q8NHG8 242 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 MRPL24Q96A35 216 aaKnown RBP7.36□□□□□ -1.23
VPS13D-212ENST00000543766 SLC39A9Q9NUM3 307 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 VWC2LB2RUY7 222 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 J3QLW9 94 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 INAFM2P0DMQ5 153 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 FSTP19883 344 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 CFHR1Q03591 330 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 IL15RAQ13261 267 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 ZC2HC1BQ5TFG8 222 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 MFSD12Q6NUT3 480 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 COMMD6Q7Z4G1 85 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 ZIC4Q8N9L1 334 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 GPHA2Q96T91 129 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 PILRAQ9UKJ1 303 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 COL4A6Q14031 1691 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 IGLV3-16A0A075B6K0 115 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 GGTLC3B5MD39 225 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 RENP00797 406 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 GCSHP23434 173 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 CXCL12P48061 93 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 EFNB2P52799 333 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 ZNF90Q03938 601 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 ZNF718Q3SXZ3 478 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 S100A7L2Q5SY68 101 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 TMEM136Q6ZRR5 245 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 VKORC1L1Q8N0U8 176 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 SLC22A18ASQ8N1D0 253 aa7.36□□□□□ -1.23
VPS13D-212ENST00000543766 NSG1A0A0A6YYJ2 146 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 TRAV4A0A0B4J268 109 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 YPEL1O60688 119 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 C1orf105O95561 183 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 FCGR2CP31995 323 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 CX3CL1P78423 397 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 SPSB3Q6PJ21 355 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 CXCL17Q6UXB2 119 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 LINC00482Q8N8I6 264 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 YPEL2Q96QA6 119 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 CMC2Q9NRP2 79 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 LSM4Q9Y4Z0 139 aaKnown RBP7.35□□□□□ -1.23
VPS13D-212ENST00000543766 LINC00312Q9Y6C7 94 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 FAM240AA0A1B0GVK7 77 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 PRB4P10163 310 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-212ENST00000543766 CD52P31358 61 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 CYCSP99999 105 aaKnown RBP7.35□□□□□ -1.23
VPS13D-212ENST00000543766 A0A0D9SEW6 157 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 VCYO14598 125 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 PGLYRP1O75594 196 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-212ENST00000543766 SRP19P09132 144 aaKnown RBP7.35□□□□□ -1.23
VPS13D-212ENST00000543766 MYOD1P15172 320 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 MEOX1P50221 254 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 HES3Q5TGS1 186 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 CXXC4Q9H2H0 198 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 TPSG1Q9NRR2 321 aa7.35□□□□□ -1.23
VPS13D-212ENST00000543766 MUC3AQ02505 3323 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 CEBPZOSA8MTT3 80 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 FAM19A1Q7Z5A9 133 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 KIAA1549LQ6ZVL6 1849 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 TRBV5-5A0A0J9YX44 114 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 J3QQQ9 107 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 DLL1O00548 723 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 FOXF1Q12946 379 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 TP53TG1Q9Y2A0 90 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 TRBV9A0A0B4J1U6 114 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 ZNF737O75373 536 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 OXTP01178 125 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 TRACP01848 142 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 FKBP2P26885 142 aaKnown RBP7.34□□□□□ -1.23
VPS13D-212ENST00000543766 CD164Q04900 197 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 AJUBAQ96IF1 538 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 WDFY3Q8IZQ1 3526 aa7.34□□□□□ -1.23
VPS13D-212ENST00000543766 A0A1B0GX51 115 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 ETV2O00321 342 aaPredicted RBP7.33□□□□□ -1.24
VPS13D-212ENST00000543766 HSPB1P04792 205 aaKnown RBP7.33□□□□□ -1.24
VPS13D-212ENST00000543766 HERVK_113P61574 105 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 CCL20P78556 96 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 SUMF1Q8NBK3 374 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 FGF13Q92913 245 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 SMDT1Q9H4I9 107 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 TIMM13Q9Y5L4 95 aaPredicted RBP7.33□□□□□ -1.24
VPS13D-212ENST00000543766 DOCK11Q5JSL3 2073 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 TRAV13-1A0A0B4J241 112 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 LYPD3O95274 346 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 RND2P52198 227 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 PRDM14Q9GZV8 571 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 PYGO1Q9Y3Y4 419 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 TRBV5-7A0A0A0MS05 114 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 F6UB75 175 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 HBE1P02100 147 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 SLC35E4Q6ICL7 350 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 PDCD1LG2Q9BQ51 273 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 CLEC7AQ9BXN2 247 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 VSIRQ9H7M9 311 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 PLEKHA3Q9HB20 300 aa7.33□□□□□ -1.24
VPS13D-212ENST00000543766 DOCK9Q9BZ29 2069 aa7.32□□□□□ -1.24
VPS13D-212ENST00000543766 CD300LBA8K4G0 201 aa7.32□□□□□ -1.24
VPS13D-212ENST00000543766 FCER1GP30273 86 aa7.32□□□□□ -1.24
VPS13D-212ENST00000543766 SFTA2Q6UW10 78 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms