RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 WNK2Q9Y3S1 2297 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 ABCA1O95477 2261 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 LGALS7P47929 136 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 CLEC12BQ2HXU8 276 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 TNFRSF14Q92956 283 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 FNDC4Q9H6D8 234 aaPredicted RBP13.14□□□□□ -0.31
COL4A1-204ENST00000543140 PKD1L2Q7Z442 2459 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 ASH1LQ9NR48 2969 aaKnown RBP13.14□□□□□ -0.31
COL4A1-204ENST00000543140 A0A1W2PPR1 153 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 ARF6P62330 175 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 C11orf71Q6IPW1 123 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 HCP5Q6MZN7 132 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 UNQ6494/PRO21346Q6UXR6 183 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 IGFBPL1Q8WX77 278 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 SLC35E1Q96K37 410 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 CTDSP1Q9GZU7 261 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 SCO2A0A1W2PP80 73 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 TRGC2P03986 189 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 CTAG1AP78358 180 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 TNXAQ16473 311 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 C19orf35Q6ZS72 473 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 RPEQ96AT9 228 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 TIMD4Q96H15 378 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 PRORYQ9H606 182 aa13.13□□□□□ -0.31
COL4A1-204ENST00000543140 FSTL3O95633 263 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 UQCRFS1P47985 274 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 ELOVL1Q9BW60 279 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 FUT9Q9Y231 359 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 H7BYZ3 331 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 IGHV2-5P01817 119 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 LIPFP07098 398 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 PSG5Q15238 335 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 ZNF114Q8NC26 417 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 CACNG8Q8WXS5 425 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 NPIPB3Q92617 1050 aa13.12□□□□□ -0.31
COL4A1-204ENST00000543140 MRPL36Q9P0J6 103 aaKnown RBP13.12□□□□□ -0.31
COL4A1-204ENST00000543140 F6UZH7 168 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 INS-IGF2F8WCM5 200 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 UBE2CO00762 179 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 GPX4P36969 197 aaPredicted RBP13.11□□□□□ -0.31
COL4A1-204ENST00000543140 SUB1P53999 127 aaKnown RBP eCLIP13.11□□□□□ -0.31
COL4A1-204ENST00000543140 PRSS8Q16651 343 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 LDLRAD2Q5SZI1 272 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 BEND2Q8NDZ0 799 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 C8orf46Q8TAG6 207 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 DOK5Q9P104 306 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 SPTAN1Q13813 2472 aaKnown RBP13.11□□□□□ -0.31
COL4A1-204ENST00000543140 AREGP15514 252 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 HNF1AP20823 631 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 CDKN1AP38936 164 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 LGALS4P56470 323 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 LINC01551Q86U37 167 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 TEX45Q8NA69 505 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 TMEM37Q8WXS4 190 aa13.11□□□□□ -0.31
COL4A1-204ENST00000543140 METTL1Q9UBP6 276 aaKnown RBP13.11□□□□□ -0.31
COL4A1-204ENST00000543140 TRBV20OR9-2A0A075B6H5 130 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 IGLC7A0M8Q6 106 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 AP4M1O00189 453 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 OR7C2O60412 319 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 NDUFS7O75251 213 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 CLN5O75503 358 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 MT-CO2P00403 227 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 OR10J4P0C629 311 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 GALR1P47211 349 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 SIGLEC9Q9Y336 463 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 A0A1W2PRD5 423 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 A0A1W2PRF3 423 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 A0A1W2PRM7 423 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 NDUFS6O75380 124 aaKnown RBP13.1□□□□□ -0.31
COL4A1-204ENST00000543140 VENTXO95231 258 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 ZNF90Q03938 601 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 KLRD1Q13241 179 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 C4orf17Q53FE4 359 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 RUSC1-AS1Q66K80 236 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 MMD2Q8IY49 270 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 LY6G5BQ8NDX9 201 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 MISP3Q96FF7 219 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 FBXL15Q9H469 300 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 HILPDAQ9Y5L2 63 aa13.1□□□□□ -0.31
COL4A1-204ENST00000543140 IGHV3-21A0A0B4J1V1 117 aa13.09□□□□□ -0.31
COL4A1-204ENST00000543140 RBP4P02753 201 aa13.09□□□□□ -0.31
COL4A1-204ENST00000543140 PFN1P07737 140 aaKnown RBP13.09□□□□□ -0.31
COL4A1-204ENST00000543140 RPL27AP46776 148 aaKnown RBP13.09□□□□□ -0.31
COL4A1-204ENST00000543140 NDUFA6P56556 154 aa13.09□□□□□ -0.31
COL4A1-204ENST00000543140 MORN5Q5VZ52 161 aa13.09□□□□□ -0.31
COL4A1-204ENST00000543140 RNASEH2CQ8TDP1 164 aaKnown RBP13.09□□□□□ -0.31
COL4A1-204ENST00000543140 NEU4Q8WWR8 484 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-204ENST00000543140 ZNF503Q96F45 646 aa13.09□□□□□ -0.31
COL4A1-204ENST00000543140 CRYGBP07316 175 aa13.09□□□□□ -0.31
COL4A1-204ENST00000543140 OR5B12Q96R08 314 aa13.09□□□□□ -0.31
COL4A1-204ENST00000543140 SSBP3Q9BWW4 388 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-204ENST00000543140 TECRQ9NZ01 308 aaKnown RBP13.09□□□□□ -0.31
COL4A1-204ENST00000543140 TRBV24-1A0A075B6N3 115 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 TRAV5A0A0B4J249 113 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 LINC00587B1AMM8 73 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST1H2BKO60814 126 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST1H2BJP06899 126 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 SFTPCP11686 197 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST1H2BOP23527 126 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST1H2BBP33778 126 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms