RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 C11orf42Q8N5U0 333 aa17.42■□□□□ 0.38
TRIM54-202ENST00000380075 PYGO2Q9BRQ0 406 aa17.42■□□□□ 0.38
TRIM54-202ENST00000380075 CD99P14209 185 aa17.42■□□□□ 0.38
TRIM54-202ENST00000380075 UBE2G2P60604 165 aa17.42■□□□□ 0.38
TRIM54-202ENST00000380075 GNB1P62873 340 aa17.42■□□□□ 0.38
TRIM54-202ENST00000380075 IGLV2-23P01705 113 aa17.41■□□□□ 0.38
TRIM54-202ENST00000380075 S100A9P06702 114 aaKnown RBP17.41■□□□□ 0.38
TRIM54-202ENST00000380075 PFN1P07737 140 aaKnown RBP17.41■□□□□ 0.38
TRIM54-202ENST00000380075 SUB1P53999 127 aaKnown RBP eCLIP17.41■□□□□ 0.38
TRIM54-202ENST00000380075 HLA-DRB5Q30154 266 aa17.41■□□□□ 0.38
TRIM54-202ENST00000380075 RNASEH2CQ8TDP1 164 aaKnown RBP17.41■□□□□ 0.38
TRIM54-202ENST00000380075 SSX3Q99909 188 aa17.41■□□□□ 0.38
TRIM54-202ENST00000380075 FBN2P35556 2912 aa17.4■□□□□ 0.38
TRIM54-202ENST00000380075 A0A1W2PPR1 153 aa17.4■□□□□ 0.38
TRIM54-202ENST00000380075 PRRX1P54821 245 aa17.4■□□□□ 0.38
TRIM54-202ENST00000380075 GAMTQ14353 236 aa17.4■□□□□ 0.38
TRIM54-202ENST00000380075 SEPSECSQ9HD40 501 aaKnown RBP17.4■□□□□ 0.38
TRIM54-202ENST00000380075 HRNRQ86YZ3 2850 aaPredicted RBP17.4■□□□□ 0.38
TRIM54-202ENST00000380075 IGHV2-70P01814 119 aa17.4■□□□□ 0.38
TRIM54-202ENST00000380075 HOXA5P20719 270 aa17.4■□□□□ 0.38
TRIM54-202ENST00000380075 MRPL41Q8IXM3 137 aaKnown RBP17.4■□□□□ 0.38
TRIM54-202ENST00000380075 OR51G1Q8NGK1 321 aa17.4■□□□□ 0.38
TRIM54-202ENST00000380075 CHODLQ9H9P2 273 aa17.4■□□□□ 0.38
TRIM54-202ENST00000380075 FUT9Q9Y231 359 aa17.4■□□□□ 0.38
TRIM54-202ENST00000380075 TRGC2P03986 189 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 GALR1P47211 349 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 DIAPH2-AS1Q14236 149 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 OR10W1Q8NGF6 305 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 SRD5A3Q9H8P0 318 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 ABCA4P78363 2273 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 PPP1R2P9O14990 202 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 NDUFB4O95168 129 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 SRP14P37108 136 aaKnown RBP17.39■□□□□ 0.37
TRIM54-202ENST00000380075 ZNF841Q6ZN19 808 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 SLC16A13Q7RTY0 426 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 LINC01551Q86U37 167 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 TMEM167BQ9NRX6 74 aa17.39■□□□□ 0.37
TRIM54-202ENST00000380075 FAM78BQ5VT40 261 aa17.38■□□□□ 0.37
TRIM54-202ENST00000380075 TEX45Q8NA69 505 aa17.38■□□□□ 0.37
TRIM54-202ENST00000380075 C8orf46Q8TAG6 207 aa17.38■□□□□ 0.37
TRIM54-202ENST00000380075 RNF2Q99496 336 aa17.38■□□□□ 0.37
TRIM54-202ENST00000380075 ZNF430Q9H8G1 570 aaPredicted RBP17.38■□□□□ 0.37
TRIM54-202ENST00000380075 TECRQ9NZ01 308 aaKnown RBP17.38■□□□□ 0.37
TRIM54-202ENST00000380075 LRBAP50851 2863 aa17.38■□□□□ 0.37
TRIM54-202ENST00000380075 IGHV2-26A0A0B4J1V2 119 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST1H2BKO60814 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST1H2BJP06899 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 AREGP15514 252 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST1H2BOP23527 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 COL8A2P25067 703 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 OR10J1P30954 320 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST1H2BBP33778 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST1H2BDP58876 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST1H2BCP62807 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST2H2BEQ16778 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.37■□□□□ 0.37
TRIM54-202ENST00000380075 BEND2Q8NDZ0 799 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 OR4P4Q8NGL7 312 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST1H2BHQ93079 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 C11orf52Q96A22 123 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 BTF3L4Q96K17 158 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 UHRF2Q96PU4 802 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST1H2BNQ99877 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 HIST1H2BMQ99879 126 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 ASH1LQ9NR48 2969 aaKnown RBP17.37■□□□□ 0.37
TRIM54-202ENST00000380075 TACC2O95359 2948 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 IGKV1OR2-108A0A075B7D4 117 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 GOSR1O95249 250 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 IGLV1-47P01700 117 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 OR5G3P0C626 314 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 CDX1P47902 265 aaPredicted RBP17.37■□□□□ 0.37
TRIM54-202ENST00000380075 TAS2R45P59539 299 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 SPATA31B1PQ5VZV4 182 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 PQLC2Q6ZP29 291 aa17.37■□□□□ 0.37
TRIM54-202ENST00000380075 ARFGEF3Q5TH69 2177 aa17.36■□□□□ 0.37
TRIM54-202ENST00000380075 KCNIP4Q6PIL6 250 aa17.36■□□□□ 0.37
TRIM54-202ENST00000380075 CLEC7AQ9BXN2 247 aa17.36■□□□□ 0.37
TRIM54-202ENST00000380075 NDUFA6P56556 154 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 MOB3BQ86TA1 216 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 IMMP2LQ96T52 175 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 MRPL32Q9BYC8 188 aaKnown RBP17.35■□□□□ 0.37
TRIM54-202ENST00000380075 RAB1BQ9H0U4 201 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 MIOXQ9UGB7 285 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 AMMECR1Q9Y4X0 333 aaPredicted RBP17.35■□□□□ 0.37
TRIM54-202ENST00000380075 YTHDF2Q9Y5A9 579 aaKnown RBP17.35■□□□□ 0.37
TRIM54-202ENST00000380075 ROS1P08922 2347 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 ELOA3CA0A087WX78 387 aaPredicted RBP17.35■□□□□ 0.37
TRIM54-202ENST00000380075 CGB1A6NKQ9 187 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 WT1-ASQ06250 92 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 MIR17HGQ75NE6 70 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 MMD2Q8IY49 270 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 OR8B3Q8NGG8 313 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 OR8B2Q96RD0 313 aa17.35■□□□□ 0.37
TRIM54-202ENST00000380075 PPP5D1E7EU14 171 aa17.34■□□□□ 0.37
TRIM54-202ENST00000380075 SLC25A17O43808 307 aa17.34■□□□□ 0.37
TRIM54-202ENST00000380075 GGCTO75223 188 aaKnown RBP17.34■□□□□ 0.37
TRIM54-202ENST00000380075 S100A12P80511 92 aa17.34■□□□□ 0.37
TRIM54-202ENST00000380075 LY96Q9Y6Y9 160 aa17.34■□□□□ 0.37
TRIM54-202ENST00000380075 UNC79Q9P2D8 2635 aa17.34■□□□□ 0.37
TRIM54-202ENST00000380075 FLNBO75369 2602 aaKnown RBP17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms