RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GPX4P36969 197 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 WT1-ASQ06250 92 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 LINC01560Q8TB33 94 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 IMMP2LQ96T52 175 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 ZNF430Q9H8G1 570 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 A0A1W2PN81 502 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 FOSL1P15407 271 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 AREGP15514 252 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 LCN2P80188 198 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 PSG5Q15238 335 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 C10orf55Q5SWW7 151 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 PNKDQ8N490 385 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 OR2T6Q8NHC8 308 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 ZNF503Q96F45 646 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 RITA1Q96K30 269 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 PFDN5Q99471 154 aa16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 TECRQ9NZ01 308 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-203ENST00000359902 C19orf24Q9BVV8 132 aa16.83■□□□□ 0.28
CCDC88B-203ENST00000359902 OR5G3P0C626 314 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 FOXL1Q12952 345 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 ACTL10Q5JWF8 245 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 UHRF2Q96PU4 802 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 TMEM133Q9H2Q1 129 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 TMEM167BQ9NRX6 74 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 ARL2-SNX15V9GYD0 113 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 MDFIC2A0A1B0GVS7 189 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 FABP4P15090 132 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 IL3RAP26951 378 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 MC5RP33032 325 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 HLA-DRB5Q30154 266 aa16.82■□□□□ 0.28
CCDC88B-203ENST00000359902 LYNX1G3V0Z9 82 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 LYNX1P0DP58 116 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 HNF1AP20823 631 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 TMEM37Q8WXS4 190 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 ACY3Q96HD9 319 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 SLC25A17O43808 307 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 MRGPRG-AS1Q2M3A8 158 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 TEX38Q6PEX7 206 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 TMEM183AQ8IXX5 376 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 CHODLQ9H9P2 273 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 RALYQ9UKM9 306 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 MSRB2Q9Y3D2 182 aa16.81■□□□□ 0.28
CCDC88B-203ENST00000359902 PPOXP50336 477 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 DEFA6Q01524 100 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 PQLC2Q6ZP29 291 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 SGMS2Q8NHU3 365 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 HIST1H2BLQ99880 126 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 FNDC4Q9H6D8 234 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 TPSG1Q9NRR2 321 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 PSMB11A5LHX3 300 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 K7EN84 100 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 GRNP28799 593 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 SSTP61278 116 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 VMA21Q3ZAQ7 101 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 COA6Q5JTJ3 125 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 RNASEH2CQ8TDP1 164 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 SLC25A33Q9BSK2 321 aa16.8■□□□□ 0.28
CCDC88B-203ENST00000359902 A0A0U1RQK1 487 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 ZNF320A2RRD8 509 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 FAM90A27PA6NNH2 459 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 C9JCJ5 164 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 RD3LP0DJH9 198 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 CA7P43166 264 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 CASP6P55212 293 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 SSBP2P81877 361 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 CDPF1Q6NVV7 123 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 OR10G8Q8NGN5 311 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 OR1P1Q8NH06 330 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 IGHV3-72A0A0B4J1Y9 119 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 XKRY2A2RUG3 117 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 SIAH2O43255 324 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 ENSAO43768 121 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 OR7C2O60412 319 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 LGALS7P47929 136 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 DLX1P56177 255 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 TAS2R45P59539 299 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 FBXL19-AS1Q494R0 122 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 C9orf152Q5JTZ5 239 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 ZNF841Q6ZN19 808 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 MUC15Q8N387 334 aa16.79■□□□□ 0.28
CCDC88B-203ENST00000359902 SUB1P53999 127 aaKnown RBP eCLIP16.78■□□□□ 0.28
CCDC88B-203ENST00000359902 BTF3L4Q96K17 158 aa16.78■□□□□ 0.28
CCDC88B-203ENST00000359902 LY96Q9Y6Y9 160 aa16.78■□□□□ 0.28
CCDC88B-203ENST00000359902 C8orf88P0DMB2 117 aa16.78■□□□□ 0.28
CCDC88B-203ENST00000359902 RPL15P61313 204 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-203ENST00000359902 PRSS8Q16651 343 aa16.78■□□□□ 0.28
CCDC88B-203ENST00000359902 EAF1Q96JC9 268 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-203ENST00000359902 IGHV2-26A0A0B4J1V2 119 aa16.77■□□□□ 0.28
CCDC88B-203ENST00000359902 A0A1W2PPI3 338 aa16.77■□□□□ 0.28
CCDC88B-203ENST00000359902 OR10J4P0C629 311 aa16.77■□□□□ 0.28
CCDC88B-203ENST00000359902 CRYBB3P26998 211 aa16.77■□□□□ 0.28
CCDC88B-203ENST00000359902 NPIPB3Q92617 1050 aa16.77■□□□□ 0.28
CCDC88B-203ENST00000359902 TNFRSF14Q92956 283 aa16.77■□□□□ 0.28
CCDC88B-203ENST00000359902 PACRGQ96M98 296 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-203ENST00000359902 DNAJC4Q9NNZ3 241 aa16.77■□□□□ 0.28
CCDC88B-203ENST00000359902 IGLV1-47P01700 117 aa16.76■□□□□ 0.27
CCDC88B-203ENST00000359902 MORN5Q5VZ52 161 aa16.76■□□□□ 0.27
CCDC88B-203ENST00000359902 FAM167A-AS1Q96KT0 104 aa16.76■□□□□ 0.27
CCDC88B-203ENST00000359902 MRPL32Q9BYC8 188 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-203ENST00000359902 IGHV3-48P01763 117 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms