RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 KLHDC3Q9BQ90 382 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 UBL5Q9BZL1 73 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 SIRT4Q9Y6E7 314 aaPredicted RBP5.27□□□□□ -1.57
VCAN-203ENST00000343200 F2Z2F3 143 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 SYS1-DBNDD2H3BUS1 97 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 TIMP3P35625 211 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 RFLNAQ6ZTI6 216 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 C9orf40Q8IXQ3 194 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 DDB2Q92466 427 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 TNFRSF12AQ9NP84 129 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 SCO2A0A1W2PP80 73 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 TRA2AQ13595 282 aaKnown RBP eCLIP5.27□□□□□ -1.57
VCAN-203ENST00000343200 LOXL2Q9Y4K0 774 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 ZNF658BQ4V348 819 aaPredicted RBP5.27□□□□□ -1.57
VCAN-203ENST00000343200 FOXD3Q9UJU5 478 aaPredicted RBP5.27□□□□□ -1.57
VCAN-203ENST00000343200 COLCA2A8K830 154 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 PRRG2O14669 202 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 TMEM42Q69YG0 159 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 CNRIP1Q96F85 164 aaPredicted RBP5.27□□□□□ -1.57
VCAN-203ENST00000343200 C20orf144Q9BQM9 153 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 JMJD1CQ15652 2540 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 A0A1W2PPM0 123 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 UCP1P25874 307 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 TEX38Q6PEX7 206 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 FAM181AQ8N9Y4 354 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 BRK1Q8WUW1 75 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 CGB1A6NKQ9 187 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 PPIHO43447 177 aaKnown RBP5.27□□□□□ -1.57
VCAN-203ENST00000343200 LAMTOR5O43504 91 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 RPL32P62910 135 aaKnown RBP5.27□□□□□ -1.57
VCAN-203ENST00000343200 SLC37A2Q8TED4 501 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 KCNK17Q96T54 332 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 PYY3Q5JQD4 70 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 FDCSPQ8NFU4 85 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 GATAD1Q8WUU5 269 aa5.27□□□□□ -1.57
VCAN-203ENST00000343200 MRPL27Q9P0M9 148 aaKnown RBP5.27□□□□□ -1.57
VCAN-203ENST00000343200 MRPS18BQ9Y676 258 aaKnown RBP5.27□□□□□ -1.57
VCAN-203ENST00000343200 ANKRD11Q6UB99 2663 aaPredicted RBP5.27□□□□□ -1.57
VCAN-203ENST00000343200 MUC6Q6W4X9 2439 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 OR2H2O95918 312 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 PXNP49023 591 aaPredicted RBP5.26□□□□□ -1.57
VCAN-203ENST00000343200 AMN1Q8IY45 258 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 FOXB1Q99853 325 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 USP24Q9UPU5 2620 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 GFRA3O60609 400 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 IGHV3-13P01766 116 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 IGHV3-7P01780 117 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 CEACAM1P13688 526 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 RNASE7Q9H1E1 156 aaKnown RBP5.26□□□□□ -1.57
VCAN-203ENST00000343200 IGKV3D-11A0A0A0MRZ8 115 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 M0R381 172 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 SOCS3O14543 225 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 IGKV3-11P04433 115 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 HOXB3P14651 431 aaPredicted RBP5.26□□□□□ -1.57
VCAN-203ENST00000343200 GATD1Q8NB37 220 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 CACNG8Q8WXS5 425 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 R4GN57 208 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 A0A1W2PRD5 423 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 A0A1W2PRF3 423 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 A0A1W2PRM7 423 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 KNCNA6PVL3 124 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 ATOX1O00244 68 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 VSIG8P0DPA2 414 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 TCTEX1D4Q5JR98 221 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 JPT2Q9H910 190 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 FOXF1Q12946 379 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 USP9XQ93008 2570 aaPredicted RBP5.26□□□□□ -1.57
VCAN-203ENST00000343200 F8WEM9 126 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 LIMS1P48059 325 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 MESP2Q0VG99 397 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 NEGR1Q7Z3B1 354 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 SARAFQ96BY9 339 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.26□□□□□ -1.57
VCAN-203ENST00000343200 FOXI3A8MTJ6 420 aaPredicted RBP5.26□□□□□ -1.57
VCAN-203ENST00000343200 IQCF6A8MYZ5 107 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 NDUFA2O43678 99 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 CD5P06127 495 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 ZNF708P17019 499 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 ZNF32P17041 273 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 CD33P20138 364 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 PLAURQ03405 335 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 DSCR8Q96T75 97 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 IL23AQ9NPF7 189 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 ST6GALNAC2Q9UJ37 374 aa5.26□□□□□ -1.57
VCAN-203ENST00000343200 TRAV1-1A0A0B4J248 108 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 ZNF664Q8N3J9 261 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 RPRMLQ8N4K4 120 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 TMEM243Q9BU79 118 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 SARGQ9BW04 601 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A10PA6NDY2 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A18PA6NE21 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A16PA6NEW6 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A20PA6NIJ5 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A8PA6NJQ4 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A7PA6NKC0 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A22PA8MWA6 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A12PA8MX19 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A5PA8MXJ8 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 FAM90A23PA8MXZ1 464 aa5.25□□□□□ -1.57
VCAN-203ENST00000343200 K7ESM1 405 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms