RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SMIM17P0DL12 118 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 COX4I1P13073 169 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 CYBAP13498 195 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 CPMP14384 443 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 S100A4P26447 101 aaKnown RBP1.27□□□□□ -2.21
CD44-239ENST00000639002 CRABP2P29373 138 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 OPRM1P35372 400 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 RAB13P51153 203 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 DEFA1P59665 94 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 CDC42P60953 191 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 HBA1P69905 142 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 RUNX1Q01196 453 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 DEFA6Q01524 100 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 APOFQ13790 326 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 ENDOGQ14249 297 aaKnown RBP1.27□□□□□ -2.21
CD44-239ENST00000639002 SURF2Q15527 256 aaPredicted RBP1.27□□□□□ -2.21
CD44-239ENST00000639002 CST6Q15828 149 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 C12orf74Q32Q52 190 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 BRMS1LQ5PSV4 323 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 TMEM78Q5T7P6 136 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 FAM104BQ5XKR9 115 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 Q6Q795 121 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 AMTNQ6UX39 209 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IFT20Q8IY31 132 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 C1orf174Q8IYL3 243 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 UMODL1-AS1Q8N2C9 162 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 KRTCAP2Q8N6L1 136 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 OR9Q1Q8NGQ5 310 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 OR4A5Q8NH83 315 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 SLC25A40Q8TBP6 338 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 MRPL30Q8TCC3 161 aaKnown RBP1.27□□□□□ -2.21
CD44-239ENST00000639002 OR5P3Q8WZ94 311 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 HIST1H2BAQ96A08 127 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 DNAJC30Q96LL9 226 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 C2orf50Q96LR7 162 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 TSPAN32Q96QS1 320 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 LYSMD1Q96S90 227 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 PFDN5Q99471 154 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 SERPINI1Q99574 410 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 HSPB9Q9BQS6 159 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 MND1Q9BWT6 205 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 C20orf27Q9GZN8 174 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IMUPQ9GZP8 106 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 WDR61Q9GZS3 305 aaKnown RBP1.27□□□□□ -2.21
CD44-239ENST00000639002 GABARAPL1Q9H0R8 117 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 ALX4Q9H161 411 aaPredicted RBP1.27□□□□□ -2.21
CD44-239ENST00000639002 LINC00574Q9H8X3 128 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 TMEM38BQ9NVV0 291 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 TAAR3PQ9P1P4 343 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 ZNF492Q9P255 531 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 LAMTOR2Q9Y2Q5 125 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 TENM4Q6N022 2769 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 TTC28Q96AY4 2481 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 RYR3Q15413 4870 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 DNAH12Q6ZR08 3092 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 KIAA1671Q9BY89 1806 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 WDR7Q9Y4E6 1490 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 FMN1Q68DA7 1419 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 UHRF1BP1Q6BDS2 1440 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 SSH2Q76I76 1423 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 CPDO75976 1380 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 TRBV19A0A075B6N1 114 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 BORCS7-ASMTA0A0B4J1R7 106 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 IGHV3-43A0A0B4J1X8 118 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 DUXBA0A1W2PPF3 345 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 A0A1W2PRE2 83 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 DPRXA6NFQ7 191 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 ARPC5O15511 151 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 SYNGR2O43760 224 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 CST8O60676 142 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 C1QBP02746 253 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 OR5AC1P0C628 307 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 SMIM10L2AP0DMW4 78 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 SMIM10L2BP0DMW5 78 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 RPS4Y1P22090 263 aaKnown RBP1.26□□□□□ -2.21
CD44-239ENST00000639002 S100A1P23297 94 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 CASP1P29466 404 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 BLVRBP30043 206 aaPredicted RBP1.26□□□□□ -2.21
CD44-239ENST00000639002 G6PCP35575 357 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 GLRXP35754 106 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 TAS2R20P59543 309 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 RPS20P60866 119 aaKnown RBP1.26□□□□□ -2.21
CD44-239ENST00000639002 AP1S1P61966 158 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 TBPL1P62380 186 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 ELF3P78545 371 aaPredicted RBP1.26□□□□□ -2.21
CD44-239ENST00000639002 TNFAIP6P98066 277 aaPredicted RBP1.26□□□□□ -2.21
CD44-239ENST00000639002 AKR1C1Q04828 323 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 BSPH1Q075Z2 132 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 SPCS2Q15005 226 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 ZNF678Q5SXM1 525 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 RPL22L1Q6P5R6 122 aaKnown RBP1.26□□□□□ -2.21
CD44-239ENST00000639002 TCF24Q7RTU0 167 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 ANGPTL5Q86XS5 388 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 OR5J2Q8NH18 312 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 OR4K13Q8NH42 304 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 ITLN2Q8WWU7 325 aaPredicted RBP1.26□□□□□ -2.21
CD44-239ENST00000639002 SLC7A6Q92536 515 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 KLK6Q92876 244 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 TOMM6Q96B49 74 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 ISOC1Q96CN7 298 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms