RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 NDUFB8O95169 186 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 EGFEM1PQ0D2K5 195 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 RBMS2Q15434 407 aaKnown RBP15.92■□□□□ 0.14
CLN3-240ENST00000631023 RPEL1Q2QD12 228 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 TMEM128Q5BJH2 165 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 TMEM268Q5VZI3 342 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 SLC25A24Q6NUK1 477 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 LHFPL5Q8TAF8 219 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 IL22RA2Q969J5 263 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 PLEKHA3Q9HB20 300 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 IFNA17P01571 189 aa15.91■□□□□ 0.14
CLN3-240ENST00000631023 TRBV12-3P01733 135 aa15.91■□□□□ 0.14
CLN3-240ENST00000631023 IL7P13232 177 aa15.91■□□□□ 0.14
CLN3-240ENST00000631023 SRPXP78539 464 aa15.91■□□□□ 0.14
CLN3-240ENST00000631023 ERHP84090 104 aaKnown RBP15.91■□□□□ 0.14
CLN3-240ENST00000631023 TMEM187Q14656 261 aa15.91■□□□□ 0.14
CLN3-240ENST00000631023 C7orf50Q9BRJ6 194 aaKnown RBP15.91■□□□□ 0.14
CLN3-240ENST00000631023 ELOVL1Q9BW60 279 aa15.91■□□□□ 0.14
CLN3-240ENST00000631023 F11RQ9Y624 299 aaKnown RBP15.91■□□□□ 0.14
CLN3-240ENST00000631023 TRBV7-1A0A0A6YYK4 115 aa15.9■□□□□ 0.14
CLN3-240ENST00000631023 LINC00854A0A1B0GVQ3 168 aa15.9■□□□□ 0.14
CLN3-240ENST00000631023 KLF5Q13887 457 aaPredicted RBP15.9■□□□□ 0.14
CLN3-240ENST00000631023 SLC35G3Q8N808 338 aa15.9■□□□□ 0.14
CLN3-240ENST00000631023 S100ZQ8WXG8 99 aa15.9■□□□□ 0.14
CLN3-240ENST00000631023 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.9■□□□□ 0.14
CLN3-240ENST00000631023 ST8SIA3O43173 380 aa15.89■□□□□ 0.13
CLN3-240ENST00000631023 PRB2P02812 416 aaPredicted RBP15.89■□□□□ 0.13
CLN3-240ENST00000631023 SUPT4H1P63272 117 aaKnown RBP15.89■□□□□ 0.13
CLN3-240ENST00000631023 ACSM6Q6P461 480 aa15.89■□□□□ 0.13
CLN3-240ENST00000631023 CENPSQ8N2Z9 138 aa15.89■□□□□ 0.13
CLN3-240ENST00000631023 OR2C3Q8N628 320 aa15.89■□□□□ 0.13
CLN3-240ENST00000631023 OR1P1Q8NH06 330 aa15.89■□□□□ 0.13
CLN3-240ENST00000631023 A0A0G2JRQ6 117 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 SAP30O75446 220 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 CCR6P51684 374 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 PDLIM3Q53GG5 364 aaPredicted RBP15.88■□□□□ 0.13
CLN3-240ENST00000631023 CLEC19AQ6UXS0 136 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 LGI3Q8N145 548 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 VN1R17PQ8TDU5 208 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 OR4C12Q96R67 309 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 ENY2Q9NPA8 101 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 CACFD1Q9UGQ2 172 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 DMRT1Q9Y5R6 373 aa15.88■□□□□ 0.13
CLN3-240ENST00000631023 BMPR1BO00238 502 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 GGCTO75223 188 aaKnown RBP15.87■□□□□ 0.13
CLN3-240ENST00000631023 IGHV3-23P01764 117 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 VAMP1P23763 118 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 SYNJ2BPP57105 145 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 KRTAP10-11P60412 298 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 CCDC32Q9BV29 185 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 AURKAIP1Q9NWT8 199 aaPredicted RBP15.87■□□□□ 0.13
CLN3-240ENST00000631023 PTTG2Q9NZH5 202 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 S4R3C0 116 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 A0A0B4J2A0 478 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 NDUFB6O95139 128 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 SNCAP37840 140 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 Q6ZRM9 215 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 GPR146Q96CH1 333 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 CCDC140Q96MF4 163 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 CACNG5Q9UF02 275 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 SHPKQ9UHJ6 478 aa15.87■□□□□ 0.13
CLN3-240ENST00000631023 MFSD2BA6NFX1 497 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 PPP5D1E7EU14 171 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 INS-IGF2F8WCM5 200 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 ARL3P36405 182 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 SPCS3P61009 180 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 UBE2MP61081 183 aaKnown RBP15.86■□□□□ 0.13
CLN3-240ENST00000631023 SPINK9Q5DT21 86 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 ZNF114Q8NC26 417 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 OR9G4Q8NGQ1 327 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 OR52E5Q8NH55 327 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 PRR13Q9NZ81 148 aa15.86■□□□□ 0.13
CLN3-240ENST00000631023 CLEC3BP05452 202 aa15.85■□□□□ 0.13
CLN3-240ENST00000631023 HOXA1P49639 335 aaPredicted RBP15.85■□□□□ 0.13
CLN3-240ENST00000631023 MFAP2P55001 183 aa15.85■□□□□ 0.13
CLN3-240ENST00000631023 AARDQ4LEZ3 155 aa15.85■□□□□ 0.13
CLN3-240ENST00000631023 ZNF502Q8TBZ5 544 aa15.85■□□□□ 0.13
CLN3-240ENST00000631023 PEMTQ9UBM1 199 aa15.85■□□□□ 0.13
CLN3-240ENST00000631023 SULT1A3P0DMM9 295 aa15.84■□□□□ 0.13
CLN3-240ENST00000631023 SULT1A4P0DMN0 295 aa15.84■□□□□ 0.13
CLN3-240ENST00000631023 SUB1P53999 127 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLN3-240ENST00000631023 DUXBA0A1W2PPF3 345 aa15.83■□□□□ 0.13
CLN3-240ENST00000631023 SFT2D2O95562 160 aa15.83■□□□□ 0.13
CLN3-240ENST00000631023 PPP1R1AQ13522 171 aa15.83■□□□□ 0.13
CLN3-240ENST00000631023 LYZL2Q7Z4W2 148 aa15.83■□□□□ 0.13
CLN3-240ENST00000631023 MISP3Q96FF7 219 aa15.83■□□□□ 0.13
CLN3-240ENST00000631023 ATP6V0BQ99437 205 aa15.83■□□□□ 0.13
CLN3-240ENST00000631023 C21orf62Q9NYP8 219 aa15.83■□□□□ 0.13
CLN3-240ENST00000631023 DNAH3Q8TD57 4116 aa15.83■□□□□ 0.12
CLN3-240ENST00000631023 LYRM1O43325 122 aa15.83■□□□□ 0.12
CLN3-240ENST00000631023 OR2C1O95371 312 aa15.83■□□□□ 0.12
CLN3-240ENST00000631023 FAM106AQ4KMX7 169 aa15.83■□□□□ 0.12
CLN3-240ENST00000631023 GPHB5Q86YW7 130 aa15.83■□□□□ 0.12
CLN3-240ENST00000631023 MRAPQ8TCY5 172 aa15.83■□□□□ 0.12
CLN3-240ENST00000631023 SCARB1Q8WTV0 552 aa15.83■□□□□ 0.12
CLN3-240ENST00000631023 WDR12Q9GZL7 423 aaKnown RBP15.83■□□□□ 0.12
CLN3-240ENST00000631023 PLA2G10O15496 165 aa15.82■□□□□ 0.12
CLN3-240ENST00000631023 HLA-AP01891 365 aaKnown RBP15.82■□□□□ 0.12
CLN3-240ENST00000631023 GPR183P32249 361 aa15.82■□□□□ 0.12
CLN3-240ENST00000631023 BTCP35070 178 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms