RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TMEM128Q5BJH2 165 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 TMEM268Q5VZI3 342 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 TMED4Q7Z7H5 227 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 FAM219AQ8IW50 185 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 OR2C3Q8N628 320 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 C7orf50Q9BRJ6 194 aaKnown RBP14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 CCDC32Q9BV29 185 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 PEF1Q9UBV8 284 aaKnown RBP14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 FLVCR2Q9UPI3 526 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 PPP1R1AQ13522 171 aa14.94□□□□□ -0.02
SHKBP1-221ENST00000599833 KLF5Q13887 457 aaPredicted RBP14.94□□□□□ -0.02
SHKBP1-221ENST00000599833 ANKRD55Q3KP44 614 aa14.94□□□□□ -0.02
SHKBP1-221ENST00000599833 PVRIGQ6DKI7 326 aa14.94□□□□□ -0.02
SHKBP1-221ENST00000599833 LRTM2Q8N967 370 aa14.94□□□□□ -0.02
SHKBP1-221ENST00000599833 ZNF114Q8NC26 417 aa14.94□□□□□ -0.02
SHKBP1-221ENST00000599833 HINT2Q9BX68 163 aa14.94□□□□□ -0.02
SHKBP1-221ENST00000599833 RANGRFQ9HD47 186 aaPredicted RBP14.94□□□□□ -0.02
SHKBP1-221ENST00000599833 TBC1D24Q9ULP9 559 aa14.94□□□□□ -0.02
SHKBP1-221ENST00000599833 F8W735 103 aaPredicted RBP14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 ATG12O94817 140 aa14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 HIST1H1BP16401 226 aaKnown RBP14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 IFITM3Q01628 133 aa14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 SPINK9Q5DT21 86 aa14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 IL34Q6ZMJ4 242 aa14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 LYZL2Q7Z4W2 148 aa14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 S100ZQ8WXG8 99 aa14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 DPF1Q92782 380 aa14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 ZNF414Q96IQ9 312 aa14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 S4R3C0 116 aa14.93□□□□□ -0.02
SHKBP1-221ENST00000599833 TGP01266 2768 aa14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 A0A0B4J2A0 478 aa14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 K7EIM0 57 aa14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 OVOL1O14753 267 aa14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 SFT2D2O95562 160 aa14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 IGHV3-23P01764 117 aa14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 PRB2P02812 416 aaPredicted RBP14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 CENPSQ8N2Z9 138 aa14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 RRNAD1Q96FB5 475 aaKnown RBP14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 MCRIP2Q9BUT9 160 aaKnown RBP14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 SHPKQ9UHJ6 478 aa14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 KCNIP3Q9Y2W7 256 aa14.92□□□□□ -0.02
SHKBP1-221ENST00000599833 PPP5D1E7EU14 171 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 LYRM1O43325 122 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 DHFRP00374 187 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 INPP1P49441 399 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 BSXQ3C1V8 233 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 C11orf87Q6NUJ2 197 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 ACSM6Q6P461 480 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 OR1P1Q8NH06 330 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 ZNF502Q8TBZ5 544 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 CACNG5Q9UF02 275 aa14.91□□□□□ -0.02
SHKBP1-221ENST00000599833 SEC14L6B5MCN3 397 aa14.9□□□□□ -0.02
SHKBP1-221ENST00000599833 DEFA4P12838 97 aa14.9□□□□□ -0.02
SHKBP1-221ENST00000599833 UBE2MP61081 183 aaKnown RBP14.9□□□□□ -0.02
SHKBP1-221ENST00000599833 OR52E5Q8NH55 327 aa14.9□□□□□ -0.02
SHKBP1-221ENST00000599833 AURKAIP1Q9NWT8 199 aaPredicted RBP14.9□□□□□ -0.02
SHKBP1-221ENST00000599833 C9orf170A2RU37 121 aa14.89□□□□□ -0.03
SHKBP1-221ENST00000599833 I3L2K1 104 aa14.89□□□□□ -0.03
SHKBP1-221ENST00000599833 PITX3O75364 302 aa14.89□□□□□ -0.03
SHKBP1-221ENST00000599833 ZP3P21754 424 aa14.89□□□□□ -0.03
SHKBP1-221ENST00000599833 C9orf66Q5T8R8 295 aa14.89□□□□□ -0.03
SHKBP1-221ENST00000599833 LGI3Q8N145 548 aa14.89□□□□□ -0.03
SHKBP1-221ENST00000599833 PLEKHA3Q9HB20 300 aa14.89□□□□□ -0.03
SHKBP1-221ENST00000599833 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.89□□□□□ -0.03
SHKBP1-221ENST00000599833 HLA-AP01891 365 aaKnown RBP14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 RNASE2P10153 161 aaKnown RBP14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 ANXA7P20073 488 aaKnown RBP14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 SRPXP78539 464 aa14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 SLC25A24Q6NUK1 477 aa14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 CLEC19AQ6UXS0 136 aa14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 VN1R17PQ8TDU5 208 aa14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 EEF1AKMT3Q96AZ1 226 aa14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 CXorf58Q96LI9 332 aa14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 COL7A1Q02388 2944 aa14.88□□□□□ -0.03
SHKBP1-221ENST00000599833 SORL1Q92673 2214 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 TRBV7-1A0A0A6YYK4 115 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 DUXBA0A1W2PPF3 345 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 CENPXA8MT69 81 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 UPK1BO75841 260 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 IFNA17P01571 189 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 OR4E1P0C645 316 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 ANXA3P12429 323 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 VAMP1P23763 118 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 MECP2P51608 486 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 SYNJ2BPP57105 145 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 SPCS3P61009 180 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 ASAH1Q13510 395 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 ZNF846Q147U1 533 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 ADAMTSL5Q6ZMM2 481 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 RNASE11Q8TAA1 199 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 SCARB1Q8WTV0 552 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 TMEM170AQ8WVE7 144 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 GPR61Q9BZJ8 451 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 WDR12Q9GZL7 423 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 C20orf85Q9H1P6 137 aa14.87□□□□□ -0.03
SHKBP1-221ENST00000599833 CLEC3BP05452 202 aa14.86□□□□□ -0.03
SHKBP1-221ENST00000599833 SULT1A3P0DMM9 295 aa14.86□□□□□ -0.03
SHKBP1-221ENST00000599833 SULT1A4P0DMN0 295 aa14.86□□□□□ -0.03
SHKBP1-221ENST00000599833 DHRS2Q13268 280 aa14.86□□□□□ -0.03
SHKBP1-221ENST00000599833 FAM209BQ5JX69 171 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms