RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CCDC94Q9BW85 323 aaPredicted RBP3.16□□□□□ -1.9
NUP54-215ENST00000514313 RTEL1-TNFRSF6BF6WH68 1400 aa3.16□□□□□ -1.9
NUP54-215ENST00000514313 TRAV9-1A0A075B6T8 112 aa3.15□□□□□ -1.91
NUP54-215ENST00000514313 IRGMA1A4Y4 181 aa3.15□□□□□ -1.91
NUP54-215ENST00000514313 PIRO00625 290 aa3.15□□□□□ -1.91
NUP54-215ENST00000514313 OR7C1O76099 320 aaPredicted RBP3.15□□□□□ -1.91
NUP54-215ENST00000514313 SLC38A11Q08AI6 406 aa3.15□□□□□ -1.91
NUP54-215ENST00000514313 KIFC1Q9BW19 673 aa3.15□□□□□ -1.91
NUP54-215ENST00000514313 PIK3C2GO75747 1445 aa3.15□□□□□ -1.91
NUP54-215ENST00000514313 DOCK5Q9H7D0 1870 aa3.15□□□□□ -1.91
NUP54-215ENST00000514313 PXDNLA1KZ92 1463 aa3.15□□□□□ -1.91
NUP54-215ENST00000514313 NCOA1Q15788 1441 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 A0A0D9SEW6 157 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 SLC22A1O15245 554 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 PGLYRP1O75594 196 aaPredicted RBP3.14□□□□□ -1.91
NUP54-215ENST00000514313 CST2P09228 141 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 FAM27BQ5VT28 67 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 KTN1-AS1Q86SY8 53 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 GDPD1Q8N9F7 314 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 OR52L1Q8NGH7 329 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 DCANP1Q8TF63 244 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 H1FXQ92522 213 aaKnown RBP3.14□□□□□ -1.91
NUP54-215ENST00000514313 BTF3L4Q96K17 158 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 DOHHQ9BU89 302 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 NMNAT1Q9HAN9 279 aaPredicted RBP3.14□□□□□ -1.91
NUP54-215ENST00000514313 TMEM106BQ9NUM4 274 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 SAMHD1Q9Y3Z3 626 aaKnown RBP3.14□□□□□ -1.91
NUP54-215ENST00000514313 MAST2Q6P0Q8 1798 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 KDM5BQ9UGL1 1544 aa3.14□□□□□ -1.91
NUP54-215ENST00000514313 NCKAP5O14513 1909 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 KIAA2026Q5HYC2 2103 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 TRAPPC2LH3BP13 241 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 S1PR2O95136 353 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 SMIM10L2AP0DMW4 78 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 SMIM10L2BP0DMW5 78 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 RPS4Y1P22090 263 aaKnown RBP3.13□□□□□ -1.91
NUP54-215ENST00000514313 SUPT4H1P63272 117 aaKnown RBP3.13□□□□□ -1.91
NUP54-215ENST00000514313 TAF1AQ15573 450 aaPredicted RBP3.13□□□□□ -1.91
NUP54-215ENST00000514313 C12orf74Q32Q52 190 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 LIN52Q52LA3 116 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 OOSP2Q86WS3 158 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 OR10X1Q8NGY0 326 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 SPACA4Q8TDM5 124 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 PAIP2Q9BPZ3 127 aaKnown RBP3.13□□□□□ -1.91
NUP54-215ENST00000514313 C20orf27Q9GZN8 174 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 PCNX2A6NKB5 2137 aa3.13□□□□□ -1.91
NUP54-215ENST00000514313 MALRD1Q5VYJ5 2156 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 SIGLEC16A6NMB1 481 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 ZNF682O95780 498 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 SERPINE1P05121 402 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 AQP4P55087 323 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 KRTAP12-3P60328 96 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 ARF6P62330 175 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 C12orf45Q8N5I9 185 aaPredicted RBP3.12□□□□□ -1.91
NUP54-215ENST00000514313 MCFD2Q8NI22 146 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 CCDC90BQ9GZT6 254 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 ICE1Q9Y2F5 2266 aa3.12□□□□□ -1.91
NUP54-215ENST00000514313 hCG_1818297A0A087WSY0 165 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 A8MT66 165 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 HMSDA8MTL9 139 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 PSMD8P48556 350 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 KRTAP12-1P59990 96 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 DEFB103AP81534 67 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 MOGQ16653 247 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 LCE1BQ5T7P3 118 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 BPIFA4PQ86YQ2 179 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 RASSF5Q8WWW0 418 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 GREB1Q4ZG55 1949 aa3.11□□□□□ -1.91
NUP54-215ENST00000514313 OR51F1A6NGY5 319 aa3.1□□□□□ -1.91
NUP54-215ENST00000514313 RBP1P09455 135 aa3.1□□□□□ -1.91
NUP54-215ENST00000514313 EIF2B2P49770 351 aaKnown RBP3.1□□□□□ -1.91
NUP54-215ENST00000514313 RELAQ04206 551 aa3.1□□□□□ -1.91
NUP54-215ENST00000514313 TMEM42Q69YG0 159 aa3.1□□□□□ -1.91
NUP54-215ENST00000514313 KRT222Q8N1A0 295 aa3.1□□□□□ -1.91
NUP54-215ENST00000514313 C9orf16Q9BUW7 83 aa3.1□□□□□ -1.91
NUP54-215ENST00000514313 CYSLTR1Q9Y271 337 aa3.1□□□□□ -1.91
NUP54-215ENST00000514313 FAM32AQ9Y421 112 aaKnown RBP3.1□□□□□ -1.91
NUP54-215ENST00000514313 HECW1Q76N89 1606 aa3.1□□□□□ -1.91
NUP54-215ENST00000514313 PCF11O94913 1555 aaKnown RBP3.09□□□□□ -1.91
NUP54-215ENST00000514313 VWDEQ8N2E2 1590 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 TRBV10-2A0A0K0K1G8 114 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 FAM159BA6NKW6 160 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 BUB1B-PAK6H3BSN5 160 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 IFNA10P01566 189 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 ZNF80P51504 273 aaPredicted RBP3.09□□□□□ -1.91
NUP54-215ENST00000514313 SPANXN3Q5MJ09 141 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 HACD4Q5VWC8 232 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 TEX36Q5VZQ5 186 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 SLC36A1Q7Z2H8 476 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 CEP19Q96LK0 163 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 PHB2Q99623 299 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 ENY2Q9NPA8 101 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 ARL5AQ9Y689 179 aa3.09□□□□□ -1.91
NUP54-215ENST00000514313 PLXNA3P51805 1871 aa3.09□□□□□ -1.92
NUP54-215ENST00000514313 NAPSAO96009 420 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 C1QCP02747 245 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 C8GP07360 202 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 TRGC1P0CF51 173 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 NFYAP23511 347 aaPredicted RBP3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms