RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 HIST1H1BP16401 226 aaKnown RBP17.21■□□□□ 0.35
PTCD3-203ENST00000409783 SLURP1P55000 103 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 RAB25P57735 213 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 UBE2MP61081 183 aaKnown RBP17.21■□□□□ 0.35
PTCD3-203ENST00000409783 IFITM3Q01628 133 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 NMSQ5H8A3 153 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 LYZL2Q7Z4W2 148 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 C1QL4Q86Z23 238 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 LGI3Q8N145 548 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 OR2C3Q8N628 320 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 LRTM2Q8N967 370 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 RNASE11Q8TAA1 199 aaKnown RBP17.21■□□□□ 0.35
PTCD3-203ENST00000409783 SHPKQ9UHJ6 478 aa17.21■□□□□ 0.35
PTCD3-203ENST00000409783 F11RQ9Y624 299 aaKnown RBP17.21■□□□□ 0.35
PTCD3-203ENST00000409783 ANKRD34BA5PLL1 514 aa17.2■□□□□ 0.34
PTCD3-203ENST00000409783 VAMP1P23763 118 aa17.2■□□□□ 0.34
PTCD3-203ENST00000409783 SRPXP78539 464 aa17.2■□□□□ 0.34
PTCD3-203ENST00000409783 EXOSC2Q13868 293 aaKnown RBP17.2■□□□□ 0.34
PTCD3-203ENST00000409783 BEAN1Q3B7T3 259 aa17.2■□□□□ 0.34
PTCD3-203ENST00000409783 KPRPQ5T749 579 aaPredicted RBP17.2■□□□□ 0.34
PTCD3-203ENST00000409783 DCUN1D4Q92564 292 aa17.2■□□□□ 0.34
PTCD3-203ENST00000409783 RANGRFQ9HD47 186 aaPredicted RBP17.2■□□□□ 0.34
PTCD3-203ENST00000409783 PEF1Q9UBV8 284 aaKnown RBP17.2■□□□□ 0.34
PTCD3-203ENST00000409783 CACNG5Q9UF02 275 aa17.2■□□□□ 0.34
PTCD3-203ENST00000409783 INS-IGF2F8WCM5 200 aa17.19■□□□□ 0.34
PTCD3-203ENST00000409783 UPK1BO75841 260 aa17.19■□□□□ 0.34
PTCD3-203ENST00000409783 SPINK9Q5DT21 86 aa17.19■□□□□ 0.34
PTCD3-203ENST00000409783 DLX4Q92988 240 aaPredicted RBP17.19■□□□□ 0.34
PTCD3-203ENST00000409783 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.19■□□□□ 0.34
PTCD3-203ENST00000409783 DNAH3Q8TD57 4116 aa17.18■□□□□ 0.34
PTCD3-203ENST00000409783 MEGF8Q7Z7M0 2845 aa17.18■□□□□ 0.34
PTCD3-203ENST00000409783 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.18■□□□□ 0.34
PTCD3-203ENST00000409783 C9orf170A2RU37 121 aa17.18■□□□□ 0.34
PTCD3-203ENST00000409783 DUS4LO95620 317 aaKnown RBP17.18■□□□□ 0.34
PTCD3-203ENST00000409783 HOXD3P31249 432 aaPredicted RBP17.18■□□□□ 0.34
PTCD3-203ENST00000409783 MECP2P51608 486 aaKnown RBP17.18■□□□□ 0.34
PTCD3-203ENST00000409783 ASAH1Q13510 395 aa17.18■□□□□ 0.34
PTCD3-203ENST00000409783 PDLIM3Q53GG5 364 aaPredicted RBP17.18■□□□□ 0.34
PTCD3-203ENST00000409783 ZNF114Q8NC26 417 aa17.18■□□□□ 0.34
PTCD3-203ENST00000409783 OR52E5Q8NH55 327 aa17.18■□□□□ 0.34
PTCD3-203ENST00000409783 CCDC140Q96MF4 163 aa17.18■□□□□ 0.34
PTCD3-203ENST00000409783 PLEKHA3Q9HB20 300 aa17.18■□□□□ 0.34
PTCD3-203ENST00000409783 MFSD2BA6NFX1 497 aa17.17■□□□□ 0.34
PTCD3-203ENST00000409783 IFNA17P01571 189 aa17.17■□□□□ 0.34
PTCD3-203ENST00000409783 TCRBP04435 133 aa17.17■□□□□ 0.34
PTCD3-203ENST00000409783 ANXA7P20073 488 aaKnown RBP17.17■□□□□ 0.34
PTCD3-203ENST00000409783 OR1P1Q8NH06 330 aa17.17■□□□□ 0.34
PTCD3-203ENST00000409783 MCRIP2Q9BUT9 160 aaKnown RBP17.17■□□□□ 0.34
PTCD3-203ENST00000409783 C20orf85Q9H1P6 137 aa17.17■□□□□ 0.34
PTCD3-203ENST00000409783 S4R3C0 116 aa17.17■□□□□ 0.34
PTCD3-203ENST00000409783 DUXBA0A1W2PPF3 345 aa17.16■□□□□ 0.34
PTCD3-203ENST00000409783 BMPR1BO00238 502 aa17.16■□□□□ 0.34
PTCD3-203ENST00000409783 OR4E1P0C645 316 aa17.16■□□□□ 0.34
PTCD3-203ENST00000409783 SPCS3P61009 180 aa17.16■□□□□ 0.34
PTCD3-203ENST00000409783 SLC25A24Q6NUK1 477 aa17.16■□□□□ 0.34
PTCD3-203ENST00000409783 OVOL1O14753 267 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 WIPF1O43516 503 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 IGHV3-23P01764 117 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 SULT1A3P0DMM9 295 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 SULT1A4P0DMN0 295 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 ZP3P21754 424 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 DHRS2Q13268 280 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 KLF5Q13887 457 aaPredicted RBP17.15■□□□□ 0.34
PTCD3-203ENST00000409783 LYG2Q86SG7 212 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 ZNF502Q8TBZ5 544 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 PDCD10Q9BUL8 212 aa17.15■□□□□ 0.34
PTCD3-203ENST00000409783 K7EIM0 57 aa17.14■□□□□ 0.33
PTCD3-203ENST00000409783 HLA-AP01891 365 aaKnown RBP17.14■□□□□ 0.33
PTCD3-203ENST00000409783 ERHP84090 104 aaKnown RBP17.14■□□□□ 0.33
PTCD3-203ENST00000409783 SMCO1Q147U7 214 aa17.14■□□□□ 0.33
PTCD3-203ENST00000409783 PVRIGQ6DKI7 326 aa17.14■□□□□ 0.33
PTCD3-203ENST00000409783 OR1L6Q8NGR2 347 aa17.14■□□□□ 0.33
PTCD3-203ENST00000409783 VN1R17PQ8TDU5 208 aa17.14■□□□□ 0.33
PTCD3-203ENST00000409783 EEF1AKMT3Q96AZ1 226 aa17.14■□□□□ 0.33
PTCD3-203ENST00000409783 CXorf58Q96LI9 332 aa17.14■□□□□ 0.33
PTCD3-203ENST00000409783 THYN1Q9P016 225 aa17.14■□□□□ 0.33
PTCD3-203ENST00000409783 PIGBOS1A0A0B4J2F0 54 aa17.13■□□□□ 0.33
PTCD3-203ENST00000409783 A0A1B0GU03 582 aa17.13■□□□□ 0.33
PTCD3-203ENST00000409783 CYB5BO43169 146 aa17.13■□□□□ 0.33
PTCD3-203ENST00000409783 PITX3O75364 302 aa17.13■□□□□ 0.33
PTCD3-203ENST00000409783 BSXQ3C1V8 233 aa17.13■□□□□ 0.33
PTCD3-203ENST00000409783 FAM209BQ5JX69 171 aa17.13■□□□□ 0.33
PTCD3-203ENST00000409783 TRBV7-1A0A0A6YYK4 115 aa17.12■□□□□ 0.33
PTCD3-203ENST00000409783 SEC14L6B5MCN3 397 aa17.12■□□□□ 0.33
PTCD3-203ENST00000409783 PPP5D1E7EU14 171 aa17.12■□□□□ 0.33
PTCD3-203ENST00000409783 RNASE2P10153 161 aaKnown RBP17.12■□□□□ 0.33
PTCD3-203ENST00000409783 HOXA1P49639 335 aaPredicted RBP17.12■□□□□ 0.33
PTCD3-203ENST00000409783 MZT2BQ6NZ67 158 aa17.12■□□□□ 0.33
PTCD3-203ENST00000409783 CLEC19AQ6UXS0 136 aa17.12■□□□□ 0.33
PTCD3-203ENST00000409783 NUDT15Q9NV35 164 aa17.12■□□□□ 0.33
PTCD3-203ENST00000409783 HSPB7Q9UBY9 170 aa17.12■□□□□ 0.33
PTCD3-203ENST00000409783 TMED3Q9Y3Q3 217 aa17.12■□□□□ 0.33
PTCD3-203ENST00000409783 TRAV6A0A075B6T7 132 aa17.11■□□□□ 0.33
PTCD3-203ENST00000409783 FAM240BA0A1B0GVZ2 78 aa17.11■□□□□ 0.33
PTCD3-203ENST00000409783 I3L2K1 104 aa17.11■□□□□ 0.33
PTCD3-203ENST00000409783 SLC25A6P12236 298 aa17.11■□□□□ 0.33
PTCD3-203ENST00000409783 EGFEM1PQ0D2K5 195 aa17.11■□□□□ 0.33
PTCD3-203ENST00000409783 C4orf46Q504U0 113 aa17.11■□□□□ 0.33
PTCD3-203ENST00000409783 C11orf87Q6NUJ2 197 aa17.11■□□□□ 0.33
PTCD3-203ENST00000409783 ACSM6Q6P461 480 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms