RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 IGLC3P0DOY3 106 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 PRDX2P32119 198 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 Q6ZN92 141 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 SLC24A4Q8NFF2 622 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 OR4B1Q8NGF8 309 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 S1PR3Q99500 378 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 INTS1Q8N201 2190 aaKnown RBP15.15■□□□□ 0.02
CCDC3-201ENST00000378825 OR7C2O60412 319 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 LINC00614P0C842 121 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 RPP30P78346 268 aaKnown RBP15.15■□□□□ 0.02
CCDC3-201ENST00000378825 PRR20EP86478 221 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 PRR20CP86479 221 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 PRR20DP86480 221 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 PRR20BP86481 221 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 PRR20AP86496 221 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 SLAQ13239 276 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 PLA2G2CQ5R387 149 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 FAM201AQ5SY85 155 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 MORN5Q5VZ52 161 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 GMPPAQ96IJ6 420 aaPredicted RBP15.15■□□□□ 0.02
CCDC3-201ENST00000378825 KCNS1Q96KK3 526 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 TXN2Q99757 166 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 CXXC4Q9H2H0 198 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 DSCAMO60469 2012 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 TRGV5A0A0B4J1U4 118 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 IGLV2-8P01709 118 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 CD46P15529 392 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 PCP4P48539 62 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 LOXL3P58215 753 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 PRR7Q8TB68 274 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 TUBG2Q9NRH3 451 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 PPP1R14DQ9NXH3 145 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 ZNRD1Q9P1U0 126 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 CDC42EP3Q9UKI2 254 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 ZFP30Q9Y2G7 519 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 RP1L1Q8IWN7 2480 aaPredicted RBP15.14■□□□□ 0.01
CCDC3-201ENST00000378825 OR4A47Q6IF82 309 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 NABP2Q9BQ15 211 aa15.14■□□□□ 0.01
CCDC3-201ENST00000378825 TRAV9-1A0A075B6T8 112 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 ZNF324O75467 553 aaPredicted RBP15.13■□□□□ 0.01
CCDC3-201ENST00000378825 ADH4P08319 380 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 SMIM21Q3B7S5 101 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 CNEP1R1Q8N9A8 125 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 FER1L6-AS2Q96M78 137 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 SLC45A2Q9UMX9 530 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 NAV3Q8IVL0 2385 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 OR5G3P0C626 314 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 HINT1P49773 126 aaPredicted RBP15.13■□□□□ 0.01
CCDC3-201ENST00000378825 DUX4L9Q6RFH8 374 aaPredicted RBP15.13■□□□□ 0.01
CCDC3-201ENST00000378825 MRPL52Q86TS9 123 aaKnown RBP15.13■□□□□ 0.01
CCDC3-201ENST00000378825 TSKUQ8WUA8 353 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 DMXL2Q8TDJ6 3036 aa15.13■□□□□ 0.01
CCDC3-201ENST00000378825 C15orf61A6NNL5 157 aa15.12■□□□□ 0.01
CCDC3-201ENST00000378825 OR52E5Q8NH55 327 aa15.12■□□□□ 0.01
CCDC3-201ENST00000378825 CHODLQ9H9P2 273 aa15.12■□□□□ 0.01
CCDC3-201ENST00000378825 TRAV5A0A0B4J249 113 aa15.12■□□□□ 0.01
CCDC3-201ENST00000378825 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.12■□□□□ 0.01
CCDC3-201ENST00000378825 PLXNB1O43157 2135 aa15.12■□□□□ 0.01
CCDC3-201ENST00000378825 AREGP15514 252 aa15.12■□□□□ 0.01
CCDC3-201ENST00000378825 MSMPQ1L6U9 139 aa15.12■□□□□ 0.01
CCDC3-201ENST00000378825 UNQ5815/PRO19632Q6UWF5 114 aa15.12■□□□□ 0.01
CCDC3-201ENST00000378825 MGAQ8IWI9 3026 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 DPRXA6NFQ7 191 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 CCL25O15444 150 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 OR2Z1Q8NG97 314 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 OR9G1Q8NH87 305 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 DDB2Q92466 427 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 CLEC7AQ9BXN2 247 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 LAMTOR2Q9Y2Q5 125 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 ROS1P08922 2347 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 HNRNPA3P51991 378 aaKnown RBP15.11■□□□□ 0.01
CCDC3-201ENST00000378825 VWA1Q6PCB0 445 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 TECRQ9NZ01 308 aaKnown RBP15.11■□□□□ 0.01
CCDC3-201ENST00000378825 PLCE1Q9P212 2302 aa15.11■□□□□ 0.01
CCDC3-201ENST00000378825 NKX2-8O15522 239 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 CECR9P0C854 216 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 GPR6P46095 362 aaPredicted RBP15.1■□□□□ 0.01
CCDC3-201ENST00000378825 IBA57Q5T440 356 aaKnown RBP15.1■□□□□ 0.01
CCDC3-201ENST00000378825 GDF5OSQ5U4N7 250 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 IL19Q9UHD0 177 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 KALRNO60229 2985 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 SAA2-SAA4A0A096LPE2 208 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 A0A1W2PN81 502 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 MT-CO2P00403 227 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 SAA2P0DJI9 122 aaPredicted RBP15.1■□□□□ 0.01
CCDC3-201ENST00000378825 CCL11P51671 97 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 TIGITQ495A1 244 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 CT45A1Q5HYN5 189 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 ERASQ7Z444 233 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 CT45A3Q8NHU0 189 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 RNASE8Q8TDE3 154 aaKnown RBP15.1■□□□□ 0.01
CCDC3-201ENST00000378825 IDI2-AS1Q9NZ38 188 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 UQCR10Q9UDW1 63 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 ABCA1O95477 2261 aa15.1■□□□□ 0.01
CCDC3-201ENST00000378825 J3QW42 95 aa15.09■□□□□ 0.01
CCDC3-201ENST00000378825 SSBP4Q9BWG4 385 aaPredicted RBP15.09■□□□□ 0.01
CCDC3-201ENST00000378825 LY96Q9Y6Y9 160 aa15.09■□□□□ 0.01
CCDC3-201ENST00000378825 TRBV9A0A0B4J1U6 114 aa15.09■□□□□ 0.01
CCDC3-201ENST00000378825 PRRX1P54821 245 aa15.09■□□□□ 0.01
CCDC3-201ENST00000378825 HSPE1P61604 102 aaKnown RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms