RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GAR1Q9NY12 217 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 PKDREJQ9NTG1 2253 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 RNASE2P10153 161 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 LOXP28300 417 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 DIAPH2-AS1Q14236 149 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 OR1L8Q8NGR8 309 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 OR10X1Q8NGY0 326 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 FLYWCH2Q96CP2 140 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 VKORC1Q9BQB6 163 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 AURKAIP1Q9NWT8 199 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 KAAG1Q9UBP8 84 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 IGKV1OR2-108A0A075B7D4 117 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 PPP1R2P9O14990 202 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 CHRNB4P30926 498 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 DLX6P56179 175 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 CLEC12BQ2HXU8 276 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 HIST3H2BBQ8N257 126 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 LINC00311Q8N616 119 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 C8orf31Q8N9H6 132 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 PCGF1Q9BSM1 259 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 NDUFA4L2Q9NRX3 87 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 ELOA3CA0A087WX78 387 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 CHRNA7P36544 502 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 GAMTQ14353 236 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 MLANAQ16655 118 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 ZNF114Q8NC26 417 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 ST6GALNAC6Q969X2 333 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 NABP2Q9BQ15 211 aa16.91■□□□□ 0.3
CCDC88B-203ENST00000359902 KALRNO60229 2985 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 TRBV20OR9-2A0A075B6H5 130 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 SRP14P37108 136 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 RPL8P62917 257 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 OR4P4Q8NGL7 312 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 TMEM186Q96B77 213 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 GPR61Q9BZJ8 451 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 COMMD5Q9GZQ3 224 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 SCO2A0A1W2PP80 73 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 A0A1W2PPQ1 181 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 PGPEP1LA6NFU8 196 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 PPP5D1E7EU14 171 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 GGCTO75223 188 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 CD99P14209 185 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 S100A2P29034 98 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 FAM71F2Q6NXP2 309 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 OR4C13Q8NGP0 309 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 OR2T10Q8NGZ9 312 aa16.9■□□□□ 0.3
CCDC88B-203ENST00000359902 E7EUB6 86 aa16.89■□□□□ 0.29
CCDC88B-203ENST00000359902 APOBEC3AP31941 199 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-203ENST00000359902 FAM78BQ5VT40 261 aa16.89■□□□□ 0.29
CCDC88B-203ENST00000359902 MIR17HGQ75NE6 70 aa16.89■□□□□ 0.29
CCDC88B-203ENST00000359902 C1QTNF9P0C862 333 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 TMEM155Q4W5P6 130 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 PDPNQ86YL7 162 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 DMRT1Q9Y5R6 373 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 TRBV23-1A0A0A0MS06 115 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 IGHV1-69-2A0A0G2JMI3 117 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 ACTL6BO94805 426 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 USF1P22415 310 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 PDZD11Q5EBL8 140 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 TMEM167AQ8TBQ9 72 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 CEP295Q9C0D2 2601 aa16.88■□□□□ 0.29
CCDC88B-203ENST00000359902 A0A087X0M5 115 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 A0A1B0GX30 115 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 MT-CO2P00403 227 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 OR10J1P30954 320 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 CD69Q07108 199 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 ARFGEF3Q5TH69 2177 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 INS-IGF2F8WCM5 200 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 GATA2P23769 480 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 ZNF137PP52743 207 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 PYY3Q5JQD4 70 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 C11orf42Q8N5U0 333 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 OR9G1Q8NH87 305 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 FUT9Q9Y231 359 aa16.87■□□□□ 0.29
CCDC88B-203ENST00000359902 B9A039 149 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 PLAUP00749 431 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 IGLV2-23P01705 113 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 CD3EP07766 207 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 FAM3BP58499 235 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 ERHP84090 104 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 OR10D4PQ8NGN7 298 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 OR4A5Q8NH83 315 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 SLC35E1Q96K37 410 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 POLEQ07864 2286 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 CGB1A6NKQ9 187 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 IGHV1-8P0DP01 117 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 KCNIP4Q6PIL6 250 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 VSTM2AQ8TAG5 236 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 PITPNC1Q9UKF7 332 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 WASHC3Q9Y3C0 194 aa16.86■□□□□ 0.29
CCDC88B-203ENST00000359902 TYMSP04818 313 aa16.85■□□□□ 0.29
CCDC88B-203ENST00000359902 OCC1Q8TAD7 63 aa16.85■□□□□ 0.29
CCDC88B-203ENST00000359902 CACNG8Q8WXS5 425 aa16.85■□□□□ 0.29
CCDC88B-203ENST00000359902 SFRP2Q96HF1 295 aa16.85■□□□□ 0.29
CCDC88B-203ENST00000359902 PTPRQQ9UMZ3 2332 aa16.85■□□□□ 0.29
CCDC88B-203ENST00000359902 DLL1O00548 723 aa16.85■□□□□ 0.29
CCDC88B-203ENST00000359902 TGIF2LXQ8IUE1 241 aa16.85■□□□□ 0.29
CCDC88B-203ENST00000359902 C11orf52Q96A22 123 aa16.85■□□□□ 0.29
CCDC88B-203ENST00000359902 TLN1Q9Y490 2541 aaKnown RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms