RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 GFI1Q99684 422 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 IGHV3OR16-13A0A075B7E8 117 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 IGHV3-74A0A0B4J1X5 117 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 IGHV3-23P01764 117 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 MBNL2Q5VZF2 373 aaKnown RBP13.35□□□□□ -0.27
USP42-201ENST00000306177 FGFBP3Q8TAT2 258 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 GPR61Q9BZJ8 451 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 HERPUD1Q15011 391 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 TEX45Q8NA69 505 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 A0A0G2JLM5 398 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 TMEM238LA0A1B0GVL6 79 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 A6NJY4 79 aa13.35□□□□□ -0.27
USP42-201ENST00000306177 SAA1P0DJI8 122 aaPredicted RBP13.35□□□□□ -0.27
USP42-201ENST00000306177 ZNF385CQ66K41 422 aaPredicted RBP13.35□□□□□ -0.27
USP42-201ENST00000306177 PLXNA3P51805 1871 aa13.34□□□□□ -0.27
USP42-201ENST00000306177 SRP19P09132 144 aaKnown RBP13.34□□□□□ -0.27
USP42-201ENST00000306177 MORN2Q502X0 79 aa13.34□□□□□ -0.27
USP42-201ENST00000306177 FAM159AQ6UWV7 190 aa13.34□□□□□ -0.27
USP42-201ENST00000306177 AKAP6Q13023 2319 aa13.34□□□□□ -0.27
USP42-201ENST00000306177 OR52E5Q8NH55 327 aa13.34□□□□□ -0.27
USP42-201ENST00000306177 UPK2O00526 184 aa13.34□□□□□ -0.27
USP42-201ENST00000306177 RAXQ9Y2V3 346 aa13.34□□□□□ -0.27
USP42-201ENST00000306177 S4R3C0 116 aa13.34□□□□□ -0.27
USP42-201ENST00000306177 TCF20Q9UGU0 1960 aaKnown RBP13.34□□□□□ -0.27
USP42-201ENST00000306177 CLPSP04118 112 aa13.34□□□□□ -0.27
USP42-201ENST00000306177 A0A0A6YYD4 124 aa13.33□□□□□ -0.27
USP42-201ENST00000306177 PEX7O00628 323 aa13.33□□□□□ -0.27
USP42-201ENST00000306177 RNF126Q9BV68 326 aa13.33□□□□□ -0.27
USP42-201ENST00000306177 CBLN4Q9NTU7 201 aa13.33□□□□□ -0.27
USP42-201ENST00000306177 GRIFINA4D1Z8 144 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 GCSHP23434 173 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 NABP1Q96AH0 204 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 SPTBN1Q01082 2364 aaKnown RBP13.33□□□□□ -0.28
USP42-201ENST00000306177 FREM3P0C091 2139 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.33□□□□□ -0.28
USP42-201ENST00000306177 RAB37Q96AX2 223 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 UQCR10Q9UDW1 63 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 COL4A6Q14031 1691 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 E9PLN8 166 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 BIVMQ86UB2 503 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 VKORC1Q9BQB6 163 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 TMEM70Q9BUB7 260 aa13.33□□□□□ -0.28
USP42-201ENST00000306177 C15orf61A6NNL5 157 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 A8MXK9 166 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 HLA-DRB1P01911 266 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 CDKN1AP38936 164 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 LY6G6FQ5SQ64 297 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 KLHDC3Q9BQ90 382 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 CBLN1P23435 193 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 GPR183P32249 361 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 TMEM144Q7Z5S9 345 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 WNT10AQ9GZT5 417 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 TMEM133Q9H2Q1 129 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 C7orf69Q9H7B7 122 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 IL36BQ9NZH7 164 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 SCO2A0A1W2PP80 73 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 H3BVH4 76 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 RBFOX2O43251 390 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP42-201ENST00000306177 C12orf54Q6X4T0 127 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 SPACA3Q8IXA5 215 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 NBR2O15453 112 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 ZNF56Q15929 161 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 FAM74A4Q5TZK3 123 aa13.32□□□□□ -0.28
USP42-201ENST00000306177 A1L4Q6 167 aa13.31□□□□□ -0.28
USP42-201ENST00000306177 MIR17HGQ75NE6 70 aa13.31□□□□□ -0.28
USP42-201ENST00000306177 KIR2DL4Q99706 377 aa13.31□□□□□ -0.28
USP42-201ENST00000306177 CACNA1GO43497 2377 aa13.31□□□□□ -0.28
USP42-201ENST00000306177 ZNF324BQ6AW86 544 aaPredicted RBP13.31□□□□□ -0.28
USP42-201ENST00000306177 FMC1Q96HJ9 113 aa13.31□□□□□ -0.28
USP42-201ENST00000306177 TRBV20OR9-2A0A075B6H5 130 aa13.31□□□□□ -0.28
USP42-201ENST00000306177 IGHV3-49A0A0A0MS15 119 aa13.31□□□□□ -0.28
USP42-201ENST00000306177 SMAD7O15105 426 aaKnown RBP13.31□□□□□ -0.28
USP42-201ENST00000306177 ATP5G3P48201 142 aa13.31□□□□□ -0.28
USP42-201ENST00000306177 PI4KAP42356 2102 aa13.31□□□□□ -0.28
USP42-201ENST00000306177 IGHV3-66A0A0C4DH42 116 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 TIMP3P35625 211 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 TBR1Q16650 682 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 SLC25A34Q6PIV7 304 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 ROS1P08922 2347 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 FOXF2Q12947 444 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 IGKV1-12A0A0C4DH73 117 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 RAMP3O60896 148 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 IGKV1D-12P01611 117 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 FOXG1P55316 489 aaPredicted RBP13.3□□□□□ -0.28
USP42-201ENST00000306177 FAM209BQ5JX69 171 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 MGAMO43451 1857 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 IGKV3-20P01619 116 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 GATA2P23769 480 aaPredicted RBP13.3□□□□□ -0.28
USP42-201ENST00000306177 HINT1P49773 126 aaPredicted RBP13.3□□□□□ -0.28
USP42-201ENST00000306177 Q0VFX4 171 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 OR4D5Q8NGN0 318 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 PLSCR4Q9NRQ2 329 aa13.3□□□□□ -0.28
USP42-201ENST00000306177 IGKV1D-8A0A087WSZ0 117 aa13.29□□□□□ -0.28
USP42-201ENST00000306177 PF4P02776 101 aa13.29□□□□□ -0.28
USP42-201ENST00000306177 SRSF7Q16629 238 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP42-201ENST00000306177 TMEM183AQ8IXX5 376 aa13.29□□□□□ -0.28
USP42-201ENST00000306177 TFF1P04155 84 aa13.29□□□□□ -0.28
USP42-201ENST00000306177 ZCCHC24Q8N2G6 241 aaKnown RBP13.29□□□□□ -0.28
USP42-201ENST00000306177 IGHV1-46P01743 117 aa13.29□□□□□ -0.28
USP42-201ENST00000306177 OTX1P32242 354 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms