RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TRAPPC1Q9Y5R8 145 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 TMEM56-RWDD3S4R434 201 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 RYR1P21817 5038 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 WRNQ14191 1432 aaPredicted RBP eCLIP1.29□□□□□ -2.2
CD44-239ENST00000639002 MIA2Q96PC5 1412 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 ARAP3Q8WWN8 1544 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 CEP152O94986 1710 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 YLPM1P49750 1951 aaKnown RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 MAP1BP46821 2468 aaKnown RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 MACF1Q9UPN3 7388 aaKnown RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 TRAV9-1A0A075B6T8 112 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 IGHV3OR15-7A0A075B7D8 119 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 TMED7-TICAM2A0A0A6YYA0 188 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 OR5H14A6NHG9 310 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 KPNA4O00629 521 aaPredicted RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 BANF1O75531 89 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 PIAS1O75925 651 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 OR2J2O76002 312 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 GADD45GO95257 159 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 IFNA10P01566 189 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 IGLV3-27P01718 113 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 CD7P09564 240 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 ESDP10768 282 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 CCL1P22362 96 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 SERPINB10P48595 397 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 ZNF140P52738 457 aaPredicted RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 EMP1P54849 157 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 GNG5P63218 68 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 PDGFRLQ15198 375 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 LINC00303Q3SY05 128 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 DEFB134Q4QY38 66 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 PYDC2Q56P42 97 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 TNFAIP8L3Q5GJ75 292 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 TMEM69Q5SWH9 247 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 IBA57Q5T440 356 aaKnown RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 ALKAL1Q6UXT8 129 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 Q6ZS49 121 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 SCXQ7RTU7 201 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 ADM2Q7Z4H4 148 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 MARCH3Q86UD3 253 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 CLVS1Q8IUQ0 354 aaPredicted RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 AMN1Q8IY45 258 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 YIPF7Q8N8F6 280 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 OR2T4Q8NH00 348 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 OR10J5Q8NHC4 309 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 ZNF675Q8TD23 568 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 GPR119Q8TDV5 335 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 RAB2BQ8WUD1 216 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 C11orf40Q8WZ69 217 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 CMBLQ96DG6 245 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 PYURFQ96I23 114 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 PEBP4Q96S96 227 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 CCL13Q99616 98 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 EFCAB11Q9BUY7 163 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 MS4A8Q9BY19 250 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 NKX6-2Q9C056 277 aaPredicted RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 CHST6Q9GZX3 395 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 PBOV1Q9GZY1 135 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 RNASE7Q9H1E1 156 aaKnown RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 PARVBQ9HBI1 364 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 SND1-IT1Q9HBX3 110 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 CA10Q9NS85 328 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 TVP23BQ9NYZ1 205 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 MED11Q9P086 117 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 GSKIPQ9P0R6 139 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 SS18L2Q9UHA2 77 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 OR52A1Q9UKL2 312 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 MCTS1Q9ULC4 181 aaKnown RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 PAIP2BQ9ULR5 123 aaKnown RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 ARHGEF10O15013 1369 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 UBR2Q8IWV8 1755 aa1.28□□□□□ -2.2
CD44-239ENST00000639002 DICER1Q9UPY3 1922 aaKnown RBP1.28□□□□□ -2.2
CD44-239ENST00000639002 RANBP2P49792 3224 aaKnown RBP1.27□□□□□ -2.21
CD44-239ENST00000639002 IGSF10Q6WRI0 2623 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 MYH10P35580 1976 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 TAF1LQ8IZX4 1826 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 ATAD5Q96QE3 1844 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 CEP170Q5SW79 1584 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 PLCH2O75038 1416 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 NUP160Q12769 1436 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 TRBV20OR9-2A0A075B6H5 130 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IGHV3-21A0A0B4J1V1 117 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IGKV1-6A0A0C4DH72 117 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IGSF23A1L1A6 192 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IZUMO1RA6ND01 250 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 PRORSD1PA6NEY8 169 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 RIIAD1A6NNX1 92 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IGLL5B9A064 214 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 C4orf51C9J302 202 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 INMT-MINDY4F8WBC2 141 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 COX7A2LO14548 114 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 MFSD11O43934 449 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 PDYNP01213 254 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IGKV1-39P01597 117 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IGHV1-46P01743 117 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 PPBPP02775 128 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 IGKV1D-39P04432 117 aa1.27□□□□□ -2.21
CD44-239ENST00000639002 DBIP07108 87 aaKnown RBP1.27□□□□□ -2.21
CD44-239ENST00000639002 SRP19P09132 144 aaKnown RBP1.27□□□□□ -2.21
CD44-239ENST00000639002 LGALS1P09382 135 aaKnown RBP1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms