RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 ATP5SQ99766 215 aa6.84□□□□□ -1.31
VAPB-206ENST00000520497 RNF5Q99942 180 aa6.84□□□□□ -1.31
VAPB-206ENST00000520497 SMIM3Q9BZL3 60 aa6.84□□□□□ -1.31
VAPB-206ENST00000520497 COMMD5Q9GZQ3 224 aa6.84□□□□□ -1.31
VAPB-206ENST00000520497 MS4A7Q9GZW8 240 aaPredicted RBP6.84□□□□□ -1.31
VAPB-206ENST00000520497 C11orf1Q9H5F2 150 aa6.84□□□□□ -1.31
VAPB-206ENST00000520497 PLEKHA3Q9HB20 300 aa6.84□□□□□ -1.31
VAPB-206ENST00000520497 HEYLQ9NQ87 328 aaPredicted RBP6.84□□□□□ -1.31
VAPB-206ENST00000520497 FOXA2Q9Y261 457 aaPredicted RBP6.84□□□□□ -1.31
VAPB-206ENST00000520497 NSD1Q96L73 2696 aaPredicted RBP6.83□□□□□ -1.32
VAPB-206ENST00000520497 IGHV3OR16-10A0A075B7F0 116 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 IGSF23A1L1A6 192 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 UPK2O00526 184 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 ATP6V1G1O75348 118 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 ACTL6BO94805 426 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 OR8U8P0C7N1 319 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 S100A1P23297 94 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 DYNLT3P51808 116 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 BPIFB3P59826 476 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 HSPE1P61604 102 aaKnown RBP6.83□□□□□ -1.32
VAPB-206ENST00000520497 PDLIM3Q53GG5 364 aaPredicted RBP6.83□□□□□ -1.32
VAPB-206ENST00000520497 FBLN7Q53RD9 439 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 RPL7L1Q6DKI1 246 aaKnown RBP6.83□□□□□ -1.32
VAPB-206ENST00000520497 STPG2Q8N412 459 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 Q8N6K4 173 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 OR10P1Q8NGE3 313 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 OR5C1Q8NGR4 320 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 OR5B3Q8NH48 314 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 RITA1Q96K30 269 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 QTRT1Q9BXR0 403 aaKnown RBP6.83□□□□□ -1.32
VAPB-206ENST00000520497 MEGF9Q9H1U4 602 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 TMEM14BQ9NUH8 114 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 TCF19Q9Y242 345 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 OR51B2Q9Y5P1 312 aa6.83□□□□□ -1.32
VAPB-206ENST00000520497 TRAV3A0A0B4J244 114 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 A0A0U1RQK1 487 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 A0A1W2PN81 502 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 H3BP45 60 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 SMAD7O15105 426 aaKnown RBP6.82□□□□□ -1.32
VAPB-206ENST00000520497 KCNAB3O43448 404 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 CD5LO43866 347 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 TSPAN9O75954 239 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 CST7O76096 145 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 KBTBD11O94819 623 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 NDUFA3O95167 84 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 LY6G6DO95868 133 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 MOSP00540 346 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 CFDP00746 253 aaPredicted RBP6.82□□□□□ -1.32
VAPB-206ENST00000520497 IFNA10P01566 189 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 IGKV1D-33P01593 117 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 IGKV1-33P01594 117 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 CRYGBP07316 175 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 SNRNP70P08621 437 aaKnown RBP6.82□□□□□ -1.32
VAPB-206ENST00000520497 SEC11BP0C7V7 166 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 CNTFRP26992 372 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 MAS1LP35410 378 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 CHRNA7P36544 502 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 RAB5CP51148 216 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 RPL8P62917 257 aaKnown RBP6.82□□□□□ -1.32
VAPB-206ENST00000520497 BLOC1S1P78537 153 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 NHLH2Q02577 135 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 SLC38A11Q08AI6 406 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 TMEM267Q0VDI3 215 aaPredicted RBP6.82□□□□□ -1.32
VAPB-206ENST00000520497 CLINT1Q14677 625 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 MRGPRG-AS1Q2M3A8 158 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 KRTAP21-3Q3LHN1 58 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 C9orf139Q6ZV77 190 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 THNSL2Q86YJ6 484 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 MMD2Q8IY49 270 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 TMEM217Q8N7C4 229 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 NPBQ8NG41 125 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 OR1L8Q8NGR8 309 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 TMEM167AQ8TBQ9 72 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 EAF1Q96JC9 268 aaPredicted RBP6.82□□□□□ -1.32
VAPB-206ENST00000520497 GINS3Q9BRX5 216 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 CYTL1Q9NRR1 136 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 KIAA1456Q9P272 454 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 DNHD1Q96M86 4753 aa6.82□□□□□ -1.32
VAPB-206ENST00000520497 LINC00862A6NCI5 91 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 NUDT19A8MXV4 375 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 UMAD1C9J7I0 102 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 TEX46H3BTG2 121 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 SLC25A17O43808 307 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 SOX15O60248 233 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 FBP1P09467 338 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 METTL15P1P0C7V9 234 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 BRS3P32247 399 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 SUB1P53999 127 aaKnown RBP eCLIP6.81□□□□□ -1.32
VAPB-206ENST00000520497 PAX9P55771 341 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 RAB2AP61019 212 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 ERHP84090 104 aaKnown RBP6.81□□□□□ -1.32
VAPB-206ENST00000520497 PRCDQ00LT1 54 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 PLGLAQ15195 96 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 PSG5Q15238 335 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 AANATQ16613 207 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 TUSC1Q2TAM9 212 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 OR8G2PQ6IF36 304 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 TREML4Q6UXN2 200 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 TMEM14EPQ6UXP3 125 aa6.81□□□□□ -1.32
VAPB-206ENST00000520497 PRIMA1Q86XR5 153 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms