RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 VCX3BQ9H321 246 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 C11orf68Q9H3H3 251 aaKnown RBP3.23□□□□□ -1.89
NUP54-215ENST00000514313 ADAMTS7Q9UKP4 1686 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 RALGAPA2Q2PPJ7 1873 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 CCDC144AA2RUR9 1427 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 IGKV1D-43A0A0B4J1Z2 117 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 H3BRN7 92 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 NOS1APO75052 506 aaPredicted RBP3.22□□□□□ -1.89
NUP54-215ENST00000514313 SERPINA7P05543 415 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 MSNP26038 577 aaKnown RBP3.22□□□□□ -1.89
NUP54-215ENST00000514313 EVX1P49640 407 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 HBA1P69905 142 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 ERHP84090 104 aaKnown RBP3.22□□□□□ -1.89
NUP54-215ENST00000514313 TPRXLQ17RH7 258 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 IAH1Q2TAA2 248 aaPredicted RBP3.22□□□□□ -1.89
NUP54-215ENST00000514313 OR6V1Q8N148 313 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 ZNF676Q8N7Q3 588 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 TXNDC17Q9BRA2 123 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 COMMD5Q9GZQ3 224 aa3.22□□□□□ -1.89
NUP54-215ENST00000514313 RNASE7Q9H1E1 156 aaKnown RBP3.22□□□□□ -1.89
NUP54-215ENST00000514313 TRAV38-1A0A0B4J264 116 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 ARRDC5A6NEK1 342 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 H7C2G1 150 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 J3QQQ9 107 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 RPL26P61254 145 aaKnown RBP3.21□□□□□ -1.9
NUP54-215ENST00000514313 HIST1H3AP68431 136 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 H3F3AP84243 136 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 AADACL3Q5VUY0 350 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 S100A7AQ86SG5 101 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 CDC26Q8NHZ8 85 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 PHOSPHO2Q8TCD6 241 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 SIGMAR1Q99720 223 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 CMSS1Q9BQ75 279 aaKnown RBP3.21□□□□□ -1.9
NUP54-215ENST00000514313 TMEM147Q9BVK8 224 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 C14orf105Q9NVL8 296 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 IDI2-AS1Q9NZ38 188 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 TP73-AS1Q9UF72 201 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 RPL26L1Q9UNX3 145 aaKnown RBP3.21□□□□□ -1.9
NUP54-215ENST00000514313 WDR90Q96KV7 1748 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 MPDZO75970 2070 aa3.21□□□□□ -1.9
NUP54-215ENST00000514313 CRYZL1O95825 349 aa3.2□□□□□ -1.9
NUP54-215ENST00000514313 C1QAP02745 245 aa3.2□□□□□ -1.9
NUP54-215ENST00000514313 Q6ZTI0 123 aa3.2□□□□□ -1.9
NUP54-215ENST00000514313 DYNAPQ8N1N2 210 aa3.2□□□□□ -1.9
NUP54-215ENST00000514313 RPP25LQ8N5L8 163 aaKnown RBP3.2□□□□□ -1.9
NUP54-215ENST00000514313 SLC7A6Q92536 515 aa3.2□□□□□ -1.9
NUP54-215ENST00000514313 DERL1Q9BUN8 251 aa3.2□□□□□ -1.9
NUP54-215ENST00000514313 TMEM56-RWDD3S4R434 201 aa3.2□□□□□ -1.9
NUP54-215ENST00000514313 IGHV1-18A0A0C4DH31 117 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 IGHV3-7P01780 117 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 PPBPP02775 128 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 SULT1A3P0DMM9 295 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 SULT1A4P0DMN0 295 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 LRRC28Q86X40 367 aaPredicted RBP3.19□□□□□ -1.9
NUP54-215ENST00000514313 Q8NDZ9 215 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 TIMM21Q9BVV7 248 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 ARL2BPQ9Y2Y0 163 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 NUP155O75694 1391 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 HECW2Q9P2P5 1572 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 COL4A2P08572 1712 aa3.19□□□□□ -1.9
NUP54-215ENST00000514313 IGLV3-9A0A075B6K5 115 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 A0A1B0GVG6 124 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 hADV38S2A0JD32 116 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 FABP5P3A8MUU1 101 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 SERPINA1P01009 418 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 IGKV1-5P01602 117 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 HIST1H2BOP23527 126 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 HIST1H2BBP33778 126 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 HIST1H2BDP58876 126 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 HIST1H2BCP62807 126 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 KISS1Q15726 138 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 HIST2H2BEQ16778 126 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.18□□□□□ -1.9
NUP54-215ENST00000514313 IBA57Q5T440 356 aaKnown RBP3.18□□□□□ -1.9
NUP54-215ENST00000514313 C9orf64Q5T6V5 341 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 HIST1H2BHQ93079 126 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 HIST1H2BNQ99877 126 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 HIST1H2BMQ99879 126 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 CHST6Q9GZX3 395 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 UQCC1Q9NVA1 299 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 ADGRL3Q9HAR2 1447 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 ZNF532Q9HCE3 1301 aa3.18□□□□□ -1.9
NUP54-215ENST00000514313 PTPRSQ13332 1948 aa3.17□□□□□ -1.9
NUP54-215ENST00000514313 EXOC1LA0A1B0GW35 172 aa3.17□□□□□ -1.9
NUP54-215ENST00000514313 PDE6DO43924 150 aa3.17□□□□□ -1.9
NUP54-215ENST00000514313 MSMBP08118 114 aa3.17□□□□□ -1.9
NUP54-215ENST00000514313 EMP1P54849 157 aa3.17□□□□□ -1.9
NUP54-215ENST00000514313 TMEM258P61165 79 aa3.17□□□□□ -1.9
NUP54-215ENST00000514313 HIST1H4AP62805 103 aaKnown RBP3.17□□□□□ -1.9
NUP54-215ENST00000514313 GLO1Q04760 184 aa3.17□□□□□ -1.9
NUP54-215ENST00000514313 RPL22L1Q6P5R6 122 aaKnown RBP3.17□□□□□ -1.9
NUP54-215ENST00000514313 ROBO3Q96MS0 1386 aa3.16□□□□□ -1.9
NUP54-215ENST00000514313 DPRXA6NFQ7 191 aa3.16□□□□□ -1.9
NUP54-215ENST00000514313 ZNF705FA8MVS1 300 aaPredicted RBP3.16□□□□□ -1.9
NUP54-215ENST00000514313 TMED2Q15363 201 aa3.16□□□□□ -1.9
NUP54-215ENST00000514313 OR51A2Q8NGJ7 313 aa3.16□□□□□ -1.9
NUP54-215ENST00000514313 OR13C4Q8NGS5 318 aa3.16□□□□□ -1.9
NUP54-215ENST00000514313 RNASE11Q8TAA1 199 aaKnown RBP3.16□□□□□ -1.9
NUP54-215ENST00000514313 CT55Q8WUE5 264 aa3.16□□□□□ -1.9
NUP54-215ENST00000514313 TOMM6Q96B49 74 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms