RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 C3orf56Q8N813 242 aa23.2■■□□□ 1.3
LIMCH1-211ENST00000509638 GPN1Q9HCN4 374 aaPredicted RBP23.2■■□□□ 1.3
LIMCH1-211ENST00000509638 SOX15O60248 233 aa23.19■■□□□ 1.3
LIMCH1-211ENST00000509638 OR4X2Q8NGF9 303 aa23.19■■□□□ 1.3
LIMCH1-211ENST00000509638 NDUFA4L2Q9NRX3 87 aa23.19■■□□□ 1.3
LIMCH1-211ENST00000509638 IGHG4P01861 327 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 TRAPPC2P0DI81 140 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 TRAPPC2BP0DI82 140 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 SMCO1Q147U7 214 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 GGNBP1Q5YKI7 109 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 OR10W1Q8NGF6 305 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 TMEM68Q96MH6 324 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 PDCD10Q9BUL8 212 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 CTNNBIP1Q9NSA3 81 aaPredicted RBP23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 IGLC7A0M8Q6 106 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 FBXO24O75426 580 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 CD28P10747 220 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 AREGP15514 252 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 HIST2H2BDQ6DRA6 164 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 TEX38Q6PEX7 206 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 C12orf45Q8N5I9 185 aaPredicted RBP23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 COA4Q9NYJ1 87 aa23.18■■□□□ 1.3
LIMCH1-211ENST00000509638 HSPE1P61604 102 aaKnown RBP23.17■■□□□ 1.3
LIMCH1-211ENST00000509638 PRCDQ00LT1 54 aa23.17■■□□□ 1.3
LIMCH1-211ENST00000509638 AARDQ4LEZ3 155 aa23.17■■□□□ 1.3
LIMCH1-211ENST00000509638 SPINK9Q5DT21 86 aa23.17■■□□□ 1.3
LIMCH1-211ENST00000509638 THOC7Q6I9Y2 204 aaKnown RBP23.17■■□□□ 1.3
LIMCH1-211ENST00000509638 COMMD1Q8N668 190 aa23.17■■□□□ 1.3
LIMCH1-211ENST00000509638 UXS1Q8NBZ7 420 aa23.17■■□□□ 1.3
LIMCH1-211ENST00000509638 OR5T1Q8NG75 326 aa23.17■■□□□ 1.3
LIMCH1-211ENST00000509638 A0A1B0GU03 582 aa23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 IFNA17P01571 189 aa23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 IGLV1-40P01703 118 aa23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 REG1AP05451 166 aa23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 TATDN3Q17R31 274 aa23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 TCTEX1D4Q5JR98 221 aa23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 LCNL1Q6ZST4 164 aa23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 OR5M8Q8NGP6 311 aa23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 FAM110DQ8TAY7 271 aaPredicted RBP23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 ZNF747Q9BV97 191 aa23.16■■□□□ 1.3
LIMCH1-211ENST00000509638 NXPH3O95157 252 aa23.15■■□□□ 1.3
LIMCH1-211ENST00000509638 FOXE3Q13461 319 aa23.15■■□□□ 1.3
LIMCH1-211ENST00000509638 OXA1LQ15070 435 aa23.15■■□□□ 1.3
LIMCH1-211ENST00000509638 CITED1Q99966 193 aa23.15■■□□□ 1.3
LIMCH1-211ENST00000509638 SRSF8Q9BRL6 282 aaKnown RBP23.15■■□□□ 1.3
LIMCH1-211ENST00000509638 MPTX1A8MV57 137 aa23.14■■□□□ 1.3
LIMCH1-211ENST00000509638 SNRPGP15A8MWD9 76 aa23.14■■□□□ 1.3
LIMCH1-211ENST00000509638 IFNA21P01568 189 aa23.14■■□□□ 1.3
LIMCH1-211ENST00000509638 PF4V1P10720 104 aa23.14■■□□□ 1.3
LIMCH1-211ENST00000509638 PSMB8P28062 276 aa23.14■■□□□ 1.3
LIMCH1-211ENST00000509638 WT1-ASQ06250 92 aa23.14■■□□□ 1.3
LIMCH1-211ENST00000509638 OR1S1Q8NH92 325 aa23.14■■□□□ 1.3
LIMCH1-211ENST00000509638 PLEKHA3Q9HB20 300 aa23.14■■□□□ 1.3
LIMCH1-211ENST00000509638 SLC25A6P12236 298 aa23.14■■□□□ 1.29
LIMCH1-211ENST00000509638 C19orf35Q6ZS72 473 aa23.14■■□□□ 1.29
LIMCH1-211ENST00000509638 NPIPB5A8MRT5 1133 aa23.13■■□□□ 1.29
LIMCH1-211ENST00000509638 CCSO14618 274 aa23.13■■□□□ 1.29
LIMCH1-211ENST00000509638 ELANEP08246 267 aa23.13■■□□□ 1.29
LIMCH1-211ENST00000509638 CXorf66Q5JRM2 361 aaPredicted RBP23.13■■□□□ 1.29
LIMCH1-211ENST00000509638 KHDC1LQ5JSQ8 128 aa23.13■■□□□ 1.29
LIMCH1-211ENST00000509638 HSD17B13Q7Z5P4 300 aaPredicted RBP23.13■■□□□ 1.29
LIMCH1-211ENST00000509638 TTC9CQ8N5M4 171 aa23.13■■□□□ 1.29
LIMCH1-211ENST00000509638 CITED2Q99967 270 aaPredicted RBP23.13■■□□□ 1.29
LIMCH1-211ENST00000509638 ZNF355PQ9NSJ1 428 aa23.13■■□□□ 1.29
LIMCH1-211ENST00000509638 OR13C7P0DN81 318 aa23.12■■□□□ 1.29
LIMCH1-211ENST00000509638 PSMB6P28072 239 aa23.12■■□□□ 1.29
LIMCH1-211ENST00000509638 RNF152Q8N8N0 203 aa23.12■■□□□ 1.29
LIMCH1-211ENST00000509638 OR52E5Q8NH55 327 aa23.12■■□□□ 1.29
LIMCH1-211ENST00000509638 KLK15Q9H2R5 256 aa23.12■■□□□ 1.29
LIMCH1-211ENST00000509638 RPLP1P05386 114 aaKnown RBP23.11■■□□□ 1.29
LIMCH1-211ENST00000509638 HOXA1P49639 335 aaPredicted RBP23.11■■□□□ 1.29
LIMCH1-211ENST00000509638 SPCS3P61009 180 aa23.11■■□□□ 1.29
LIMCH1-211ENST00000509638 TMEM65Q6PI78 240 aa23.11■■□□□ 1.29
LIMCH1-211ENST00000509638 MS4A10Q96PG2 267 aa23.11■■□□□ 1.29
LIMCH1-211ENST00000509638 C7orf66A4D0T2 115 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 PITX3O75364 302 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 PRH1P02810 166 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 CTRB1P17538 263 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 CD83Q01151 205 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 PDLIM3Q53GG5 364 aaPredicted RBP23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 CTRB2Q6GPI1 263 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 MRPL41Q8IXM3 137 aaKnown RBP23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 ALG5Q9Y673 324 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 H3BUA1 57 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 CRYGCP07315 174 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 TNFRSF9Q07011 255 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 HSPB7Q9UBY9 170 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 CACFD1Q9UGQ2 172 aa23.1■■□□□ 1.29
LIMCH1-211ENST00000509638 TCRBV4S1A1TA0A5B7 111 aa23.09■■□□□ 1.29
LIMCH1-211ENST00000509638 TPPP2P59282 170 aa23.09■■□□□ 1.29
LIMCH1-211ENST00000509638 SHISA2Q6UWI4 295 aa23.09■■□□□ 1.29
LIMCH1-211ENST00000509638 OR10C1Q96KK4 312 aa23.09■■□□□ 1.29
LIMCH1-211ENST00000509638 FAM25EA8MYX2 175 aa23.08■■□□□ 1.29
LIMCH1-211ENST00000509638 TRGV3P03979 118 aa23.08■■□□□ 1.29
LIMCH1-211ENST00000509638 RAB9AP51151 201 aa23.08■■□□□ 1.29
LIMCH1-211ENST00000509638 IAH1Q2TAA2 248 aaPredicted RBP23.08■■□□□ 1.29
LIMCH1-211ENST00000509638 SLA2Q9H6Q3 261 aa23.08■■□□□ 1.29
LIMCH1-211ENST00000509638 ENY2Q9NPA8 101 aa23.08■■□□□ 1.29
LIMCH1-211ENST00000509638 CEBPZOSA8MTT3 80 aa23.07■■□□□ 1.28
LIMCH1-211ENST00000509638 SSNA1O43805 119 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms