RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 LGALS1P09382 135 aaKnown RBP12.23□□□□□ -0.45
CLN3-201ENST00000333496 ZNF735P0CB33 412 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 RAP2BP61225 183 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 ZNF616Q08AN1 781 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 OR4A47Q6IF82 309 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 VSTM2AQ8TAG5 236 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 PHB2Q99623 299 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 ZNF355PQ9NSJ1 428 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 A0A1B0GW64 132 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 DISC1C4P0D8 188 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 GPR31O00270 319 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 RBMXL2O75526 392 aaKnown RBP12.22□□□□□ -0.45
CLN3-201ENST00000333496 BRI3O95415 125 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 IL6RP08887 468 aaPredicted RBP12.22□□□□□ -0.45
CLN3-201ENST00000333496 HOXD3P31249 432 aaPredicted RBP12.22□□□□□ -0.45
CLN3-201ENST00000333496 KRTAP10-11P60412 298 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 DEFA5Q01523 94 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 POU2AF1Q16633 256 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 ADAD2Q8NCV1 583 aaKnown RBP12.22□□□□□ -0.45
CLN3-201ENST00000333496 ZNF680Q8NEM1 530 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 MCRIP2Q9BUT9 160 aaKnown RBP12.22□□□□□ -0.45
CLN3-201ENST00000333496 AURKAIP1Q9NWT8 199 aaPredicted RBP12.22□□□□□ -0.45
CLN3-201ENST00000333496 BET1LQ9NYM9 111 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 IGHV4OR15-8A0A075B7B6 117 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 A0A087WW49 117 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 ACTL6BO94805 426 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 S1PR2O95136 353 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 MYOD1P15172 320 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 F2RP25116 425 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 TAS2R31P59538 309 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 EGFEM1PQ0D2K5 195 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 LHFPL1Q86WI0 220 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 SEC22CQ9BRL7 303 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 RSRP1Q9BUV0 290 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 PLEKHA2Q9HB19 425 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 SLC2A8Q9NY64 477 aa12.22□□□□□ -0.45
CLN3-201ENST00000333496 TRAV3A0A0B4J244 114 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 LINC00862A6NCI5 91 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 TEX22C9J3V5 150 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 G3V3Q6 166 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 OR8U8P0C7N1 319 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 OR9G9P0C7N8 305 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 NQO2P16083 231 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 UCP3P55916 312 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 LGALSLQ3ZCW2 172 aaPredicted RBP12.21□□□□□ -0.46
CLN3-201ENST00000333496 ZNF585BQ52M93 769 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 PHLDA2Q53GA4 152 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 CMTM1Q8IZ96 169 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 UXS1Q8NBZ7 420 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 CD300LFQ8TDQ1 290 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 SPIN2AQ99865 258 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 PRRT1Q99946 306 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 SPIN2BQ9BPZ2 258 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 COA4Q9NYJ1 87 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 UBQLN2Q9UHD9 624 aa12.21□□□□□ -0.46
CLN3-201ENST00000333496 TGP01266 2768 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 CGB1A6NKQ9 187 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 IFNA6P05013 189 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 ANXA7P20073 488 aaKnown RBP12.2□□□□□ -0.46
CLN3-201ENST00000333496 MAS1LP35410 378 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 SLURP1P55000 103 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 RPL8P62917 257 aaKnown RBP12.2□□□□□ -0.46
CLN3-201ENST00000333496 LPCAT3Q6P1A2 487 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 REC114Q7Z4M0 266 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 TTC9CQ8N5M4 171 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 DCUN1D4Q92564 292 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 DPF1Q92782 380 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 AIFM2Q9BRQ8 373 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 COMMD9Q9P000 198 aa12.2□□□□□ -0.46
CLN3-201ENST00000333496 LINC01619G3V211 115 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 MPPED1O15442 326 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 PRH1P02810 166 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 HSPB1P04792 205 aaKnown RBP12.19□□□□□ -0.46
CLN3-201ENST00000333496 RPA2P15927 270 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 RPL27AP46776 148 aaKnown RBP12.19□□□□□ -0.46
CLN3-201ENST00000333496 SCGB2B2Q4G0G5 96 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 CLLU1Q5K131 121 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 ARRDC1Q8N5I2 433 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 OR4A5Q8NH83 315 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 DLX4Q92988 240 aaPredicted RBP12.19□□□□□ -0.46
CLN3-201ENST00000333496 SLC25A21Q9BQT8 299 aaPredicted RBP12.19□□□□□ -0.46
CLN3-201ENST00000333496 GPR61Q9BZJ8 451 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 UPK2O00526 184 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 HLA-GP17693 338 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 LPAR6P43657 344 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 C19orf35Q6ZS72 473 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 TBC1D26Q86UD7 250 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 SLC38A6Q8IZM9 456 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 DMBX1Q8NFW5 382 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 OR13C8Q8NGS7 320 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 CITED4Q96RK1 184 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 TMEM140Q9NV12 185 aa12.19□□□□□ -0.46
CLN3-201ENST00000333496 TRBV9A0A0B4J1U6 114 aa12.18□□□□□ -0.46
CLN3-201ENST00000333496 A0A0G2JLM5 398 aa12.18□□□□□ -0.46
CLN3-201ENST00000333496 C13orf42A0A1B0GVH6 325 aa12.18□□□□□ -0.46
CLN3-201ENST00000333496 MARCH11A6NNE9 402 aa12.18□□□□□ -0.46
CLN3-201ENST00000333496 RAB14P61106 215 aa12.18□□□□□ -0.46
CLN3-201ENST00000333496 EXOSC2Q13868 293 aaKnown RBP12.18□□□□□ -0.46
CLN3-201ENST00000333496 SLC2A9Q9NRM0 540 aa12.18□□□□□ -0.46
CLN3-201ENST00000333496 HMSDA8MTL9 139 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms